View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_low_58 (Length: 219)
Name: NF12841_low_58
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 11444464 - 11444262
Alignment:
| Q |
1 |
gggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatccttgattttgattaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
11444464 |
gggagaaacttatactcgacgcaggcttcagcagctataagattactcctatatgcggcttcaagtctatcatcgaagtttatccttaattttgattaga |
11444365 |
T |
|
| Q |
101 |
acttgtttcacttaagttatgattaaaattcaataagtttgtactcataagtcaaattgatagtcacaactgaataatgttaattaaggtgctatgttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11444364 |
acttgtttcacttaagttatgattaaaattcaataagtttgtactcaaaagtcaaattgatagtcacaactgaataatgttaattaaggtgctatgttgt |
11444265 |
T |
|
| Q |
201 |
ttg |
203 |
Q |
| |
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||| |
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| T |
11444264 |
ttg |
11444262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 11548644 - 11548846
Alignment:
| Q |
1 |
gggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatccttgattttgattaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
11548644 |
gggagaaacttatactcgacgcaggcttcagcagctataagattactcctatatgcggcttcaagtctatcatcgaagtttatccttaattttgattaga |
11548743 |
T |
|
| Q |
101 |
acttgtttcacttaagttatgattaaaattcaataagtttgtactcataagtcaaattgatagtcacaactgaataatgttaattaaggtgctatgttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11548744 |
acttgtttcacttaagttatgattaaaattcaataagtttgtactcaaaagtcaaattgatagtcacaactgaataatgttaattaaggtgctatgttgt |
11548843 |
T |
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| Q |
201 |
ttg |
203 |
Q |
| |
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||| |
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| T |
11548844 |
ttg |
11548846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 11441588 - 11441388
Alignment:
| Q |
1 |
gggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatccttgatttt-gattag |
99 |
Q |
| |
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|||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
11441588 |
gggagaaactcatattcgacgcaggcttcagcagctataagattacacctatatgcggcttcaaatctatcatcgaagtttatccttaatttttgattag |
11441489 |
T |
|
| Q |
100 |
aacttgtttcacttaagttatgattaaaattcaataagtttgtactcataagtcaaattgatagtcacaactgaataatgttaattaaggtgctatgttg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11441488 |
aacttgtttcacttaagttatgattaaaattcaataagtttgtactcaaaagtcaaattgatagtcacaactgaatactgttaattaaggtgctatgttg |
11441389 |
T |
|
| Q |
200 |
t |
200 |
Q |
| |
|
| |
|
|
| T |
11441388 |
t |
11441388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 11508302 - 11508386
Alignment:
| Q |
1 |
gggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatcc |
85 |
Q |
| |
|
|||||||||| ||| |||||||||| |||||||||||||||||| ||||||||||||| ||||| ||| |||||||||| ||||| |
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| T |
11508302 |
gggagaaactcatattcgacgcaggtttcagcagctataagattacacctatatgcggtttcaagtctctcatcgaagtatatcc |
11508386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 11524534 - 11524636
Alignment:
| Q |
18 |
gacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatccttgattttgattagaacttgtttcacttaagt |
117 |
Q |
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||||| |||||||||||||| |||||| | || ||||| |||||||| ||| | || ||||||||||||| ||| | ||||| | ||||| || ||||| |
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| T |
11524534 |
gacgctggcttcagcagctacaagattactccaatatgtggcttcaagtctcttatagaagtttatccttaattctaattagtagttgttgcaaataagt |
11524633 |
T |
|
| Q |
118 |
tat |
120 |
Q |
| |
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||| |
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|
| T |
11524634 |
tat |
11524636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 11487860 - 11487941
Alignment:
| Q |
18 |
gacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatccttgattttgattag |
99 |
Q |
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||||| |||||||||||||| |||||| | || ||||| |||||||| || |||| ||||||||||| | ||||| ||||| |
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| T |
11487860 |
gacgctggcttcagcagctacaagattactccaatatgtggcttcaagtcactcatagaagtttatccctaattttaattag |
11487941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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