View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_low_8 (Length: 502)
Name: NF12841_low_8
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 9 - 487
Target Start/End: Original strand, 48455622 - 48456103
Alignment:
| Q |
9 |
gagaagcaaaggtggccggctggtggaggctgcttcgtcggaaattgctcttcgccattggaaaagcaattctccaaggtcattcatttcttttgtggtt |
108 |
Q |
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| T |
48455622 |
gagaagcaaaggtggccggctggtggaggttgcttcgtcggaaattgctcttcgccattggaaaagcaattctccaaggtcattcatttcttttgtggtt |
48455721 |
T |
|
| Q |
109 |
gtaggaaactcccaatcgaagtcgattccatcgaatccaaaggttcgagcgacttggattgtagagttgatgaatgtagcacgtgccgtggggtcagagg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48455722 |
gtaggaaactcccaatcgaagtcgattccatcgaatccaaaggttcgagcgacttggattgtagagttgatgaaggtagcacgtgccgtggggtcagagg |
48455821 |
T |
|
| Q |
209 |
cgatgaaagcaaagagtgtggaattgctagttgcacctccaatggaaaggagggtaggaatgggaggggttttagttttgaaagtgttggtgaaagtagt |
308 |
Q |
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| T |
48455822 |
caatgaaagcaaagagtgtggaattgctagttgcacctccaatggaaaggagggtaggaatgggaggggttttagttttgaaagtgttggtgaaagtagt |
48455921 |
T |
|
| Q |
309 |
gagggaggtggctacagttgttgaa---tcttcttcttcttctagcttataagtgaatttgttgggtgaaacaaaagcgtagaaaatgtgagtgaaaagt |
405 |
Q |
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| T |
48455922 |
gagggaggtggctacagttgttgaatcttcttcttcttcttctagcttataagtgaatttgttgggtgaaacaaaagcgtagaaaatgtgagtgaaaagt |
48456021 |
T |
|
| Q |
406 |
gatgtatctatggaagctggagggaaaagtgggttttctatccagtatatgcctttcacacgtgtagttgatgatggtgatg |
487 |
Q |
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| T |
48456022 |
gatgtatctatggaagatggagggaaaagtgggttttctatccagtatatgcctttcacacgtgtggttgatgatggtgatg |
48456103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 48461078 - 48461383
Alignment:
| Q |
9 |
gagaagcaaaggtggccggctggtggaggctgcttcgtcggaaattgctcttcgccattggaaaagcaattctccaaggtcattcatttcttttgtggtt |
108 |
Q |
| |
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||||||||| |||||||||| ||||| ||| |||| ||||| || ||| ||||||||||||| |||| |||||| ||||| ||||||||||| ||| || |
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| T |
48461078 |
gagaagcaacggtggccggccggtggtggcgccttcatcggagatagcttttcgccattggaagagcatttctccgaggtcgttcatttctttagtgttt |
48461177 |
T |
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| Q |
109 |
gtaggaaactcccaatcgaagtcgattccatcgaatccaaaggttcgagcgacttggattgtagagttgatgaatgtagcacgtgccgtggggtcagagg |
208 |
Q |
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| T |
48461178 |
ttaggaaactcccaatccaagtcaattccatcgaatccaaatgtacgagcaacgtcgattgtagagttaatgaaggcggcacatgcgggtggatcggagg |
48461277 |
T |
|
| Q |
209 |
cgatgaaagcaaagagtgtggaattgctagttgcacctccaatggaaaggagggtaggaatgggaggggttttagttttgaaagtgttggtgaaagtagt |
308 |
Q |
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| T |
48461278 |
cgatgaaggccaacaaggatgaattgctacctgcacctccaatggaaaagagagtagctgcaggaggggattttgttttgaaggttttggtgaaagtgtt |
48461377 |
T |
|
| Q |
309 |
gaggga |
314 |
Q |
| |
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|||||| |
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| T |
48461378 |
gaggga |
48461383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 487
Target Start/End: Original strand, 48461444 - 48461547
Alignment:
| Q |
384 |
gtagaaaatgtgagtgaaaagtgatgtatctatggaagctggagggaaaagtgggttttctatccagtatatgcctttcacacgtgtagttgatgatggt |
483 |
Q |
| |
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|||||| |||||||| || |||||||| |||| | || ||||||||||| ||| ||||||| |||||| || |||||||||||||| ||||||||| | |
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| T |
48461444 |
gtagaagatgtgagtaaagagtgatgtgtctactgtagttggagggaaaaatggattttctaaccagtaaatacctttcacacgtgtgattgatgatgat |
48461543 |
T |
|
| Q |
484 |
gatg |
487 |
Q |
| |
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|||| |
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|
| T |
48461544 |
gatg |
48461547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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