View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12842_high_1 (Length: 653)

Name: NF12842_high_1
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12842_high_1
NF12842_high_1
[»] chr8 (15 HSPs)
chr8 (19-451)||(2517584-2518016)
chr8 (19-188)||(2506970-2507139)
chr8 (19-280)||(2513532-2513799)
chr8 (21-204)||(2428420-2428603)
chr8 (21-204)||(1458713-1458896)
chr8 (51-206)||(2498019-2498174)
chr8 (561-640)||(2517395-2517474)
chr8 (564-640)||(1458972-1459048)
chr8 (564-640)||(2428679-2428755)
chr8 (564-640)||(2513035-2513111)
chr8 (565-640)||(2506422-2506497)
chr8 (563-640)||(2497695-2497772)
chr8 (21-113)||(2431399-2431491)
chr8 (564-636)||(2435046-2435118)
chr8 (21-183)||(2434784-2434943)
[»] chr3 (1 HSPs)
chr3 (51-151)||(50703459-50703558)


Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 2518016 - 2517584
Alignment:
Q  19 gtgtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2518016 gtgtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagc 2517917  T
Q  119 tcaaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaatttattacgttgatttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2517916 tcaaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaatttattacgttgatttt 2517817  T
Q  219 gtagtcaagaatgcacttgatgtgagtatgatatcaaggccttaagttatgatgttttcatgtgctaaatgactcctttctttgtttagtatctgctggc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2517816 gtagtcaagaatgcacttgatgtgagtatgatatcaaggccttaagttatgatgttttcatgtgctaaatgactcctttctttgtttagtatctgctggc 2517717  T
Q  319 tgtttggtcctacattctttttccgttttcttcttttgttcagcctgctttggtttggaaaagaaccaatattgaatgagtcatgtacttattaggaact 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2517716 tgtttggtcctacattctttttccgttttcttcttttgttcagcctgctttggtttggaaaagaaccaatattgaatgagtcatgtacttattaggaact 2517617  T
Q  419 gaaagttcattgcttttatataattttcccatc 451  Q
    |||||||||||||||||||||||| ||||||||    
T  2517616 gaaagttcattgcttttatataatcttcccatc 2517584  T

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Target: chr8; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 2507139 - 2506970
Alignment:
Q  19 gtgtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||| ||    
T  2507139 gtgtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatatagtgtgggggataactaattgggaagagtacagcttgatccctgcggc 2507040  T
Q  119 tcaaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtat 188  Q
     ||||||| |||||||||||| || || |||||||||||||| ||||||||||||||||| |||||||||    
T  2507039 acaaatacatttcaaaattgagcatactgatgttcctctttcctactatactggaattctaggtatgtat 2506970  T

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Target: chr8; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 2513799 - 2513532
Alignment:
Q  19 gtgtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagc 118  Q
    |||||||||||||| | ||||||||||||||||||||||| ||||||||| | ||||||||| | |||||||||||||||||||||||||||||||||||    
T  2513799 gtgtgtctaaagttctagaatctggacacaaagattataaagaaggtgatatcgtgtgggggataactaattgggaagagtacagcttgatccctgcagc 2513700  T
Q  119 tcaaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaatttattacgttgattt- 217  Q
     ||||||| ||| |||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||  || ||||||||||||| ||| ||||||||     
T  2513699 acaaatacattttaaaattgagcacactgatgttcctctttcctactatacaggaattcttggtatgtgatccacaatttcaattttttatgttgatttc 2513600  T
Q  218 -----tgtagtcaagaatgcacttgatgtgagtatgatatcaaggccttaagttatgatgttttcatg 280  Q
         | |||   ||| ||||||||||||  ||||||||| || || | |||||||||||||||||||    
T  2513599 taggctctagcacagagtgcacttgatgtcggtatgatatgaatgcgtcaagttatgatgttttcatg 2513532  T

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Target: chr8; HSP #4
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 2428420 - 2428603
Alignment:
Q  21 gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctc 120  Q
    |||||||||||||| |||||||||||   |||||||||| ||| ||||||||| |||||  ||||||| ||||||||||| || ||| ||||||||||||    
T  2428420 gtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccctgcagctc 2428519  T
Q  121 aaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaattt 204  Q
    ||||||||||||||||||| || |||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  2428520 aaatacttttcaaaattgagcatacagatgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaattt 2428603  T

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Target: chr8; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 1458713 - 1458896
Alignment:
Q  21 gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctc 120  Q
    |||||||||||||| |||||||||||   |||||||||| ||| ||||||||| |||||  | ||||| ||||||||||| || ||| ||||||||||||    
T  1458713 gtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggaatgactaaatgggaagagtatagtttggtccctgcagctc 1458812  T
Q  121 aaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaattt 204  Q
    ||||||||||||||||||| || |||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  1458813 aaatacttttcaaaattgagcatacagatgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaattt 1458896  T

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Target: chr8; HSP #6
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 2498174 - 2498019
Alignment:
Q  51 gattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacagatg 150  Q
    ||||||||||||||||||||||| ||||| ||   ||| |||||||||||||||||| ||||| || |||||||||||||||||||||| ||||| ||||    
T  2498174 gattataaggaaggtgatttagtttggggattctgtaaatgggaagagtacagcttggtcccttcatctcaaatacttttcaaaattgagcacactgatg 2498075  T
Q  151 ttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaatttat 206  Q
    | || ||||| |||||||||||||| || ||||||| |||||||||||||||||||    
T  2498074 tcccactttcctactatactggaatactcggtatgttttcaacaatttcaatttat 2498019  T

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Target: chr8; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 561 - 640
Target Start/End: Complemental strand, 2517474 - 2517395
Alignment:
Q  561 agcacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgt 640  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2517474 agcacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgt 2517395  T

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Target: chr8; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 564 - 640
Target Start/End: Original strand, 1458972 - 1459048
Alignment:
Q  564 acaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgt 640  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  1458972 acaggtatgcctggaatgactgcttatgctggtttctttgaagtaggctctcctaagaaaggagagaatgtttttgt 1459048  T

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Target: chr8; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 564 - 640
Target Start/End: Original strand, 2428679 - 2428755
Alignment:
Q  564 acaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgt 640  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  2428679 acaggtatgcctggaatgactgcttatgctggtttctttgaagtaggctctcctaagaaaggagagaatgtttttgt 2428755  T

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Target: chr8; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 564 - 640
Target Start/End: Complemental strand, 2513111 - 2513035
Alignment:
Q  564 acaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgt 640  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||| || ||||||||||||||||||||    
T  2513111 acaggtatgccaggaatgactgcttattctggtttctttgaagtaggctctcccaagaaaggagagaatgtttttgt 2513035  T

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Target: chr8; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 565 - 640
Target Start/End: Complemental strand, 2506497 - 2506422
Alignment:
Q  565 caggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgt 640  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| || | || ||||||||||||||||||||    
T  2506497 caggtatgccaggaatgactgcttatgctggtttctttgaagtaggcgctaccaagaaaggagagaatgtttttgt 2506422  T

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Target: chr8; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 563 - 640
Target Start/End: Complemental strand, 2497772 - 2497695
Alignment:
Q  563 cacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgt 640  Q
    |||||||||||||||||| || ||||||||||||||||||||| |||||  ||| || |||||||||| |||||||||    
T  2497772 cacaggtatgccaggaataactgcttatgctggtttctttgaactaggcagtcctaagaaaggagagactgtttttgt 2497695  T

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Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 2431399 - 2431491
Alignment:
Q  21 gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccct 113  Q
    |||||||||||||| |||||||||||   |||||||||| ||| ||||||||| |||||  ||||||| ||||||||||| || ||| |||||    
T  2431399 gtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccct 2431491  T

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Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 564 - 636
Target Start/End: Original strand, 2435046 - 2435118
Alignment:
Q  564 acaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgttt 636  Q
    ||||||||||| |||||||| || |||||||||||||||||| |||||  ||| || ||||||||||||||||    
T  2435046 acaggtatgccgggaatgactgcatatgctggtttctttgaattaggcagtcctaagaaaggagagaatgttt 2435118  T

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Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 2434784 - 2434943
Alignment:
Q  21 gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctc 120  Q
    |||||||||||||| |||||||||||   |||||||||| ||| ||||| ||| ||| |  ||||||| ||||||||||| || ||| | ||| || ||     
T  2434784 gtgtctaaagttgtagaatctggacatccagattataagaaagatgattcagtttggagtcttactaaatgggaagagtatagtttggttcctacaactg 2434883  T
Q  121 aaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggta 183  Q
     ||   ||||||||||||| ||||  ||||| || ||||| || ||||| |||||||||||||    
T  2434884 gaa---ttttcaaaattgagcacaatgatgtcccactttcctattataccggaattcttggta 2434943  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 50703558 - 50703459
Alignment:
Q  51 gattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacagatg 150  Q
    ||||||||||||||||||| ||| ||||| ||   ||| |||||||||||||||||| | |||  | |||||||||||||||||||||| ||||| ||||    
T  50703558 gattataaggaaggtgattaagtttggggattctgtaaatgggaagagtacagcttggtacct-tatctcaaatacttttcaaaattgagcacactgatg 50703460  T

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