View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12842_high_10 (Length: 342)

Name: NF12842_high_10
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12842_high_10
NF12842_high_10
[»] chr4 (1 HSPs)
chr4 (41-329)||(45805947-45806235)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 41 - 329
Target Start/End: Original strand, 45805947 - 45806235
Alignment:
Q  41 agtgattgaatcctgattttagtcctgaaatttagagattagataatttgatatgaaattaaaaaacctccttgatcctgttgatagtctggtcaagtta 140  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  45805947 agtgattgaattctgattttagtcctgaaatttagagattagataatttgatatgaaattaaaaaacctccttgatcctgttgataggctggtcaattta 45806046  T
Q  141 gtcatttagatcatctcaaagtggctaatgtgattgagcattttcaattcagtgatcgtgttagaattttgtttatgtctgaccctacaatttcgaggac 240  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45806047 gtcattgagatcatctcaaagtggctaatgtgattgagcattttcaattcagtgatcgtgttagaattttgtttatgtctgaccctacaattttgaggac 45806146  T
Q  241 taaataatgaattcttagatgtctaactcgtgattatgttccccgtttgtgtaatcgtgcaaccaagttatcctgtattgtttccgtct 329  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45806147 taaataatgaattgttagatgtctaacttgtgattatgttccccgtttgtgtaattgtgcaaccaagttatcctgtattgtttccgtct 45806235  T

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