View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12842_high_13 (Length: 320)
Name: NF12842_high_13
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12842_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 42445101 - 42445405
Alignment:
| Q |
1 |
cacatttgataaccttcgaacttaaacccccaactagagatggtattccagaacctaaacaactcaatggagagctccgtgaccggttcaattcaaggga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
42445101 |
cacatttgataaccttcgaacttaaacccccaactagagatggaattccagaacctaaacaacttaagagagagctccgtgaccggttcaattcaaggga |
42445200 |
T |
|
| Q |
101 |
aggtccaccaataatggaaaggccattcccctccctatccgtttcttctttttgttcatgtggatcttgatttgaattaagtttaagtttattgttgggt |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445201 |
aggtccaccaataatggaaagtccattcccctccctatctgtttcttctttttgttcatgtggatcttgatttgaattaagtttaagtttattgttgggt |
42445300 |
T |
|
| Q |
201 |
tttgttcatattcgatgatgaactaagttcttccctttttcccattgaaatctttcactgtttttggttggattatgaataattagatgaatatatgtga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| |
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| T |
42445301 |
tttgttcatattcgatgatgaactaagttcttccctttttcccattgaaatctttcattatttttgattggattatgaataattagatgaatatatgtga |
42445400 |
T |
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| Q |
301 |
taagt |
305 |
Q |
| |
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||||| |
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| T |
42445401 |
taagt |
42445405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 19008021 - 19008132
Alignment:
| Q |
4 |
atttgataaccttcgaacttaaacccccaactagagatggtattccagaacctaaacaactcaatggagagctccgtgaccggttcaattcaagggaagg |
103 |
Q |
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||||||||||||||||||| |||| |||||||||| |||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| |
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| T |
19008021 |
atttgataaccttcgaactgaaactcccaactagacatggaattccagaacctaaacatctcaatggagagctctgtgattggttcaattcaagggaagg |
19008120 |
T |
|
| Q |
104 |
tccaccaataat |
115 |
Q |
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|||||||||||| |
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| T |
19008121 |
tccaccaataat |
19008132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 22057416 - 22057307
Alignment:
| Q |
5 |
tttgataaccttcgaacttaaacccccaactagagatggtattccagaacctaaacaactcaatggagagctccgtgaccggttcaattcaagggaaggt |
104 |
Q |
| |
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|||||| ||||||||||| ||||||| ||| |||||||| |||| |||||||||||| || ||||||||| ||| |||| |||||||||||||||||| | |
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| T |
22057416 |
tttgatgaccttcgaactgaaacccctaacaagagatggaattctagaacctaaacatctaaatggagagttccatgactggttcaattcaagggaagtt |
22057317 |
T |
|
| Q |
105 |
ccaccaataa |
114 |
Q |
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|||||||||| |
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| T |
22057316 |
ccaccaataa |
22057307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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