View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12842_high_15 (Length: 265)
Name: NF12842_high_15
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12842_high_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 36060160 - 36059910
Alignment:
| Q |
11 |
gaagaaggacgatcaaattttggacctcacaataagaaatacattttatttttagaatttgaagaagaaacatctataaaagttcaataagtgccatact |
110 |
Q |
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| T |
36060160 |
gaagaaggacgatcaaattttgaacctcacaataagaggtacattttatttttagaa-----agaagaaacatctatagaagttcaataagtgccatact |
36060066 |
T |
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| Q |
111 |
caccaacattgcccacttatgaagacacttagagtgaaaggatcatgatacatataggaagtcttcaacatctctttgacaatgcagaagccttatcacc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36060065 |
caccaacattgcccacttatgaagacacttagagtgaaaggatcatgatacatataggaagtcttcaacatctctttgacaatgcagaagccttatcacc |
36059966 |
T |
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| Q |
211 |
attaatacttgaagatctctat-gaaaaaactgagaaataaaagccaaaatgatat |
265 |
Q |
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|| ||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
36059965 |
atgaatacttgaagatctctataaaaaaaattgagaaataaaagccaaaatgatat |
36059910 |
T |
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