View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12842_high_2 (Length: 640)
Name: NF12842_high_2
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12842_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 571; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 16 - 622
Target Start/End: Complemental strand, 38483906 - 38483300
Alignment:
| Q |
16 |
tcactgcacgccaaggataagctctatcattccaaccaacaataatcgccacttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaa |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38483906 |
tcaccgcacgccaaggataagctctatcattccaaccaacaataatcgccacttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaa |
38483807 |
T |
|
| Q |
116 |
caaattccaaaacgacctccgttcaacaaaacctgtcttcccaacacgatttccatcgaaaaaactactcccgatatcaataggccatttcaatttctca |
215 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38483806 |
caaattccaaaacgacctccgttcaacaaaacccgtcttcccaacacgatttccatcgaaaaaactactcccaatatcaataggccatttcaatttctca |
38483707 |
T |
|
| Q |
216 |
aaacacctcttactccaaaaatactcatttatatcatcataatttctccatctcgtatgtggttccgttccattaccactcctaatctcagcctcaaact |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38483706 |
aaacacctcttactccaaaaatactcatttatatcatcataatttctccatcttgtatgtggttccgttccattaccactcctaatctcagcctcaaact |
38483607 |
T |
|
| Q |
316 |
tcaccattttataaatcggcttcacaacatcgtttaaaaaaccatattgcgaatgaaagaacggttcataatcataatgatcattgtttttcttactccg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38483606 |
tcaccattttataaatcggcttcacaacatcgtttaaaaaaccatattgcgaatgaaagaacggttcataatcataatgatcattgtttttcttactccg |
38483507 |
T |
|
| Q |
416 |
caagattttatttaaatcatttgccatatgatgaaaaatatagcaaatacattcaggaataaaacgtaaattcgcagactccccccaaatgagaagataa |
515 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| |
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| T |
38483506 |
caagattttatttaaatcatttgtcatatgatgaaaaatatagcaaatacattcaggaataaaacgtaaattcgcagattccccccaaataaggagataa |
38483407 |
T |
|
| Q |
516 |
agagaaacatacagaatctcacgacgatgatcagagttattatttttaagatcaggaagcgagacacttgacttaacatgcaagtaactgcaccagtaag |
615 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38483406 |
agagaaacatacagaatctcacgacgatgatcagagttattatttttaagatcaggaagcgagacacttgacttaacatgcaagtaactgcaccaggaag |
38483307 |
T |
|
| Q |
616 |
tgtaatt |
622 |
Q |
| |
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||||||| |
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| T |
38483306 |
tgtaatt |
38483300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 3682910 - 3682860
Alignment:
| Q |
216 |
aaacacctcttactccaaaaatactcatttatatcatcataatttctccat |
266 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
3682910 |
aaacacctcctactccaaaaatactcatttatatcatcataattcctccat |
3682860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 67 - 265
Target Start/End: Complemental strand, 30118257 - 30118047
Alignment:
| Q |
67 |
cttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaacaaaacctgtcttcccaacacgatt |
166 |
Q |
| |
|
||||||||||||| | |||||| | ||||||||| |||||||||| ||||| |||||||||||| ||| | |||||||| || ||||| |||||| | || |
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| T |
30118257 |
cttgaagaaacaacaccaacataatccaaagcctgtcaaaactccgaaacagattccaaaacgatctctgctcaacaaatccggtcttaccaacatgttt |
30118158 |
T |
|
| Q |
167 |
tccatcg------------aaaaaactactcccgatatcaataggccatttcaatttctcaaaacacctcttactccaaaaatactcatttatatcatca |
254 |
Q |
| |
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|| | |||||| ||||||| | |||| ||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
30118157 |
ccccttaccaacagtagtaaaaaaattactcccaacatcaggaggccatttcatcttctcaaaacacctcctactccaaaaatactcattaatatcatca |
30118058 |
T |
|
| Q |
255 |
taatttctcca |
265 |
Q |
| |
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||||||||||| |
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|
| T |
30118057 |
taatttctcca |
30118047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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