View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12842_low_10 (Length: 436)
Name: NF12842_low_10
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12842_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 102 - 288
Target Start/End: Original strand, 17166089 - 17166275
Alignment:
| Q |
102 |
aaagtgtatgtagaatgacaaatttaaatgttaatactctaaaatcttctatttaagttgaaagagatttacgtcatttcatctgaaatatttaaaatag |
201 |
Q |
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| T |
17166089 |
aaagtgtatgtagaatgataaatttaaatgttaatactctaaaatctcctatttaaattgaaagagatttacgtcatttcatctgaaatatttaaaatag |
17166188 |
T |
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| Q |
202 |
gatgttgaggaaaactcaaatcctacattaaaaatagataggttctcgaaagagtttctaacaagtgaaattctcaccttaaaaaca |
288 |
Q |
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| T |
17166189 |
gttgttgaggaaaactcaaatcctacattaaaaataaataggttctcgaaagagttcctaacaagtgaaattctcaccttacaaaca |
17166275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 335 - 425
Target Start/End: Original strand, 17166274 - 17166364
Alignment:
| Q |
335 |
catcacatcgaaaacagttaagatttgaaataagtttctaaagagtgacactcattacattataaaccgatttgtaagataagaaagacat |
425 |
Q |
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| T |
17166274 |
catcacatcgaaaacagttaagatttgaaatacgtttctaaagaatgacactcattacattacaaactgatttgtaagataagaaagacat |
17166364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 17166030 - 17166088
Alignment:
| Q |
13 |
cagagaccctaagccaaaaagatgtaaatttgtaagaaaatgaaatcataatataaggt |
71 |
Q |
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| T |
17166030 |
cagagaccctaagccaaaaagatgtaaatttgtaagaaaatgaaatcataatataaggt |
17166088 |
T |
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