View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12842_low_11 (Length: 425)
Name: NF12842_low_11
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12842_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 414
Target Start/End: Original strand, 35793541 - 35793938
Alignment:
| Q |
17 |
aaatggtatggttgaatgtagttttcatcatacaataagctttctctaatttgagaagcgaataaatacaatgctcttggattattcaataaatttccca |
116 |
Q |
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| T |
35793541 |
aaatggtatggttgaatgtagttttcatcatacaataagctttctctaatttgagaagcgaataaatacaatgctcttggattattcaataaatttccca |
35793640 |
T |
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| Q |
117 |
taactaaaaaattgaccaacatttatataatagtaacaaatgatgatggttgctaactatactcttgcacgcattgtactaagctgtcccagcttcatca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35793641 |
taactaaaaaattgaccaacatttatataatagtaacaaatgatgatggttgctaactatactcttgcacgcattgtactaagctgtcccagcttcatca |
35793740 |
T |
|
| Q |
217 |
acaagcacggtttattatatcctagttagttataaaattaactaacacttataataaaatgaatcaattttcctgaccnnnnnnnnntatgaatcaattt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35793741 |
acaagcacggtttattatatcctagttagttataaaattaactaacacttataataaaatgaatcaattttcctgaccaaaaaaaaatatgaatcaattt |
35793840 |
T |
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| Q |
317 |
tagttctataaatcaatcttttacattnnnnnnntctcttaatatacgagtaggtacaattgtacccacaaattagttctgcacttattctatttcat |
414 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35793841 |
tagttctataaatcaatcttttacattaaaaaaatctcttaatatacgattagttacaattgtacccacaaattagttctgcacttattctatttcat |
35793938 |
T |
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