View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12842_low_13 (Length: 359)
Name: NF12842_low_13
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12842_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 42129125 - 42128802
Alignment:
| Q |
19 |
atagagagcaacatttaaatgcttcttgcattgcaagtaagctcttaaaaagccaaaagccaggtgacaaggtacttctagtgtacgttcccggtctaga |
118 |
Q |
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| T |
42129125 |
atagagagcaacatttaaatgcttcttgcattgcaagtaagctcttaaaaagccaaaagccaggtgacaaggtacttctagtgtacgttcccggtctaga |
42129026 |
T |
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| Q |
119 |
tttcatcgatgcattctttggatgcctaagagctaaagttataccagtcccggttattcccccagatcccatgcaaagaggtggacaagcacttttaaaa |
218 |
Q |
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| T |
42129025 |
tttcatcgatgcattctttggatgcctaagagctaaagttataccagtcccggttattcccccagatcccatgcaaagaagcggacaagcacttttaaaa |
42128926 |
T |
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| Q |
219 |
attgagaacattgccaagtcatgtggcatagtggcaattttatcaacagttgcttatcactcagcagtacgtgcaggtttagtgaaaaactttatcacat |
318 |
Q |
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| T |
42128925 |
attgagaacattgccaagtcatgtggcatagtggcaattttatcaacagtggcttatcactcagcagtacgtgcaggtttagtgaaaaactttatcacat |
42128826 |
T |
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| Q |
319 |
tgaaaaatgggaaatcctcagctc |
342 |
Q |
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| T |
42128825 |
tgaaaaatgggaaatcctcagctc |
42128802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 126 - 307
Target Start/End: Complemental strand, 24932607 - 24932426
Alignment:
| Q |
126 |
gatgcattctttggatgcctaagagctaaagttataccagtcccggttattcccccagatcccatgcaaagaggtggacaagcacttttaaaaattgaga |
225 |
Q |
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| T |
24932607 |
gatgccttctttggatgcctaaaagctaaagtcataccagtcccaattattcccccggatcccatgcaaagaagtggacaagcactaatgaaaattgaaa |
24932508 |
T |
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| Q |
226 |
acattgccaagtcatgtggcatagtggcaattttatcaacagttgcttatcactcagcagtacgtgcaggtttagtgaaaaa |
307 |
Q |
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| T |
24932507 |
acattgccaagtcatgtggcattgtggcaattttgtcaaccatagcttatcactcagcagtccgtgcaggttcattgaaaaa |
24932426 |
T |
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