View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12842_low_14 (Length: 346)
Name: NF12842_low_14
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12842_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 4330015 - 4330346
Alignment:
| Q |
1 |
ataacaagtgttatccaaatccaatgtacaaggataagaataaactcccataattcttgtaactgttttatctatatatacacacaattaccaaataaga |
100 |
Q |
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| T |
4330015 |
ataacaagtgttatccaaatccaatgtacaaggataagaataaactcccataattcttgtaactgttttatctatatatacacacaattaccaaataaga |
4330114 |
T |
|
| Q |
101 |
atcatcattcttttcataaattgcagaggagtgtgttagatacaatttgtttcaaaccgagggtaaccgtgacagtcgaccagatttg----ataagggc |
196 |
Q |
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| T |
4330115 |
atcatcattcttttcataaattgtagaggagtgtgttagatacaatttgtttcaaaccgagggtaacgctgacggtcgacca-atttgttaattaagggc |
4330213 |
T |
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| Q |
197 |
ataatcgaagtgagcgaagacggtgg-tggatggtgatgacattgagaaattgtgtttgaaactcttctcgaacggtcaccatctaccaccgtcttcact |
295 |
Q |
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|||||| ||||||||||||||||||| ||| || || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4330214 |
ataatcaaagtgagcgaagacggtggttggttgatggtgacattgagaaattgtgtttgaaactcttctcgaacagtcaccatctaccaccgtcttcact |
4330313 |
T |
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| Q |
296 |
ccctccgattacggcttcttttagaccaacact |
328 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
4330314 |
ccctccgattacggcttcttctagaccaacact |
4330346 |
T |
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