View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12842_low_16 (Length: 329)
Name: NF12842_low_16
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12842_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 5401876 - 5401556
Alignment:
| Q |
1 |
caagtatccaaatttcctttgagtaatgtacatgtaaaggcttaaaaagtgtaaaataaaataattg---ataaacaccaacagaataataatagtacct |
97 |
Q |
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| T |
5401876 |
caagtatgcaaatttcctttgagtaatgtacatgtaaagacc-aaaaagtggaaaataaaataatgataaataaacactaacagaataataatattacct |
5401778 |
T |
|
| Q |
98 |
atcatgagcttggaatgaacataaaccatgaatcttctannnnnnngtgcattcaagtattgtgtttcaggatgaggagaatctaatggaagatactctc |
197 |
Q |
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| T |
5401777 |
atcatgagcttggaatgaacataaaccatgaatcttctatttttctgtgcattccagtattgtgtttcaggataaggagaatccaatggaagatactctc |
5401678 |
T |
|
| Q |
198 |
cttttcccttatgctccctatttgcaagacaaaagaaattcaagtagtcttttggatgtcctatttcaccactttcttttattgcttcaccaatcaatct |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5401677 |
cttttcccttatgctccctatttgcaagacaaaagaaattcaagtagtcttttggatgtcctatttcaccactttctttaattgcttcaccaatcaatct |
5401578 |
T |
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| Q |
298 |
atacatcattgccacaggttct |
319 |
Q |
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| T |
5401577 |
atacatcattgccacagtttct |
5401556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 93 - 308
Target Start/End: Original strand, 43052059 - 43052274
Alignment:
| Q |
93 |
tacctatcatgagcttggaatgaacataaaccatgaatcttctannnnnnngtgcattcaagtattgtgtttcaggatgaggagaatctaatggaagata |
192 |
Q |
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| T |
43052059 |
tacctatcatgagcttggagtgaacataaaccatgaatcttctatttttctgtgcactccaatattgagtatcaggaagaggagaatgtggaggaagata |
43052158 |
T |
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| Q |
193 |
ctctccttttcccttatgctccctatttgcaagacaaaagaaattcaagtagtcttttggatgtcctatttcaccactttcttttattgcttcaccaatc |
292 |
Q |
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||| | ||| |||| | || ||||||||||| ||||||||||||||||| ||| ||||||||||| |||||||||||| | |||||||| |||||| |
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| T |
43052159 |
ttcttcattttccttcttttctctatttgcaaggcaaaagaaattcaagtaatctcttggatgtcctggctcaccactttctatgattgcttctccaatc |
43052258 |
T |
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| Q |
293 |
aatctatacatcattg |
308 |
Q |
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|| |||||||||||| |
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| T |
43052259 |
aacttatacatcattg |
43052274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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