View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12842_low_17 (Length: 326)
Name: NF12842_low_17
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12842_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 42788402 - 42788696
Alignment:
| Q |
20 |
agatgatgaattaatgaccatgtatctaattcatatgaagatggaatatttgatgatggtactgtttcaggcaatattggattattctgaacatgtagga |
119 |
Q |
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| T |
42788402 |
agatgatgaattaatgaccatgtatctaattcatatgaagatggaatatttgatgatggtagtgtttcaggcaatattggattattctgaacatgtagga |
42788501 |
T |
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| Q |
120 |
aattgggattataactgttgatatcaatatttttgatatcattttgatgatcaataccttgtaggattggagttgggatattgatgggaaggtaaaggtg |
219 |
Q |
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| T |
42788502 |
aattgggattataactgttgatatcaatatttttgatatcattttgatgatcaataccttgtaggattggagttgggatattgatgggaaggtaaaggtg |
42788601 |
T |
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| Q |
220 |
gttgtcaaagtgatattgatgattggagttaaggataggattgtcattaaataaagggaagaaactttcaacggaactatttctaggacagtgaa |
314 |
Q |
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| T |
42788602 |
gttgtcaaagtgatattgatgattggagttaaggataggattgtcattaaataaagggaagaaactttcaacagaaccatttctaggacagtgaa |
42788696 |
T |
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