View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12842_low_18 (Length: 322)
Name: NF12842_low_18
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12842_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 17166402 - 17166694
Alignment:
| Q |
14 |
taatttaggaaagatacatttccaaagcaagaataattttataccttgacacctaaatgctggttgaaaccaaggaaaattccaatagggagtccaacaa |
113 |
Q |
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| T |
17166402 |
taatttaggaaagatgcatttccaaagcaagaatagttttataccttgacacctaaatgctggttgaaaccaaggaaaattccaatagggagtccaacaa |
17166501 |
T |
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| Q |
114 |
tataatagcatgccaaatttatgtaaccaaccataacttgccacccacatccaattaccacacctatataaatgaccaaaaagttcgattttgaaaacga |
213 |
Q |
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| T |
17166502 |
tataatagcatgccaaatttatgtaaccaaccataacttgccacccacatccaattaccacacctatataaatgaccaaaaagttcgattttgaaaacga |
17166601 |
T |
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| Q |
214 |
gagactattttctttactctaataaaataaaggggtcaaaactgcaattaaacttagattaaactttttctaatccaaaagcaagtaaattat |
306 |
Q |
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| T |
17166602 |
gagactattttctttactctaataaaataaaggggtcaaaactgcaattaaacttagattaaactttttctagtccaaaagcaagtaaattat |
17166694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 17148683 - 17148823
Alignment:
| Q |
39 |
agcaagaataattttataccttgacacctaaatgctggttgaaaccaaggaaaattccaatagggagtccaacaatataatagcatgccaaatttatgta |
138 |
Q |
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| T |
17148683 |
agcaagaataattttataccttcacacccaaatgctggttgaatccaaggaaaattccaatagggagtccaacaatataataacatgccaagtttatgta |
17148782 |
T |
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| Q |
139 |
accaaccataacttgccacccacatccaattaccacaccta |
179 |
Q |
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| T |
17148783 |
accaaccataacttgccatccacatccaatgaccacaccta |
17148823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 17134836 - 17134965
Alignment:
| Q |
52 |
ttataccttgacacctaaatgctggttgaaaccaaggaaaattccaatagggagtccaacaatataatagcatgccaaatttatgtaaccaaccataact |
151 |
Q |
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| T |
17134836 |
ttataccttgacccctaaatgctggttgaaaccaaggaaaattgcaatagggagtccaataatgtaataacatcccaagtttatgtaaccaaccataact |
17134935 |
T |
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| Q |
152 |
tgccacccacatccaattaccacacctata |
181 |
Q |
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| T |
17134936 |
tgccatccacatccaatgaccacacctata |
17134965 |
T |
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