View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12842_low_20 (Length: 295)
Name: NF12842_low_20
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12842_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 277
Target Start/End: Original strand, 6566930 - 6567190
Alignment:
| Q |
17 |
ttcactgcagaggccggggttaaggttagcaggatttacacaagtctagnnnnnnnctttattgacatcagtactgtgcatttgttgaatatgttgaaag |
116 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6566930 |
ttcactgcagagtccggggttaaggttagcaggatttacacaagtctagtttttttctttattgacatcagtactgtgcatttgttgaatatgttgaaag |
6567029 |
T |
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| Q |
117 |
gatctgattgttcgtttttgactgaggaacagatggtctccaatttgacattcaagcaagagaatactattgccgatgaaccagttgttgatctgttgaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6567030 |
gatctgattgttcgtttttgactgaggaacagatggtctccaatctgacattcaagcaagagaatactattgccgatgaaccagttgttgatctgttgaa |
6567129 |
T |
|
| Q |
217 |
gtttttgaccaacaagctagatgctgctgttgtaaaagcacgacttccatctggccataac |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6567130 |
gtttttgaccaacaagctagatgctgctgttgtaaaagcacgacttccatctggccataac |
6567190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 6652383 - 6652582
Alignment:
| Q |
17 |
ttcactgcagaggccggggttaaggttagcaggatttacacaagtctagnnnnnnnctttattgacatcagtactgtgcatttgttgaatatgttgaaag |
116 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| |||||||||| || ||||||||||||||||||||||| |
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| T |
6652383 |
ttcactgcagaagccggagttaaggttagcaggatttacacaagtctagtttttttctttatggacatcagtattgcgcatttgttgaatatgttgaaag |
6652482 |
T |
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| Q |
117 |
gatctgattgttcgtttttgactgaggaacagatggtctccaatttgacattcaagcaagagaatactattgccgatgaaccagttgttgatctgttgaa |
216 |
Q |
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| T |
6652483 |
gatctgattgtttgtttttgattgaggaacagatggtctccaatttgatgttcaagcaagagaatactattgccgatgaatcagttgttgatctgttgaa |
6652582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 6732783 - 6732982
Alignment:
| Q |
17 |
ttcactgcagaggccggggttaaggttagcaggatttacacaagtctagnnnnnnnctttattgacatcagtactgtgcatttgttgaatatgttgaaag |
116 |
Q |
| |
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||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| |||||||||| || ||||||||||||||||||||||| |
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| T |
6732783 |
ttcactgcagaagccggtgttaaggttagcaggatttacacaagtctagtttttttctttatggacatcagtattgcgcatttgttgaatatgttgaaag |
6732882 |
T |
|
| Q |
117 |
gatctgattgttcgtttttgactgaggaacagatggtctccaatttgacattcaagcaagagaatactattgccgatgaaccagttgttgatctgttgaa |
216 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6732883 |
gatctgattgtttgtttttgattgaggaacagatggtctccaatttgatgttcaagcaagagaatactattgccgatgaatcagttgttgatctgttgaa |
6732982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 6652597 - 6652630
Alignment:
| Q |
244 |
tgttgtaaaagcacgacttccatctggccataac |
277 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
6652597 |
tgttgtaaaagcacgacttccatctggccataac |
6652630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 6732997 - 6733030
Alignment:
| Q |
244 |
tgttgtaaaagcacgacttccatctggccataac |
277 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
6732997 |
tgttgtaaaagcacgacttccatctggccataac |
6733030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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