View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12842_low_21 (Length: 291)
Name: NF12842_low_21
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12842_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 48500176 - 48500443
Alignment:
| Q |
16 |
cttccttcaatataatccacaaactttccccctccttttgtggttgattaaatttgaaaggaggtgtttcatataattattcacattcagggtaattttc |
115 |
Q |
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| T |
48500176 |
cttccttcaatataatccacaaactttccccctccttttgtggttgatttaatttgaaaggaggtgtttcatataattattcacattcagggtaattttc |
48500275 |
T |
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| Q |
116 |
catgaattagaggcaaatcaacttcatcacaccactcaatacatctagtttcaaaatgactcccttttgcttggtccggcaagtaactaacccaaaattc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48500276 |
catgaattagaggcaaatcaacttcatcacaccactcaatacatctagtttcaaaatgactcccttttgcttggtccggcaagtaactaacccaaaattc |
48500375 |
T |
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| Q |
216 |
tccccctatcctccacttcaacacactcccttccatctctttacttaacctccaccctacttcttctc |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48500376 |
tccccctatcctccacttcaacacactcccttccatctctttacttaacctccaccctacttcttctc |
48500443 |
T |
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