View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12842_low_26 (Length: 246)
Name: NF12842_low_26
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12842_low_26 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 702974 - 702746
Alignment:
| Q |
1 |
ttaacacttctttatttatttttactcgtttggttgaatctgttgaaccaattaaactatgatacaaaagtttcacgggttcgatctcatgtttgacaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
702974 |
ttaacacttctttatttatttttactcgtttggttgaatctgttgaaccaattaaactatgatacaaaagtttcacgggttcgatctcatgtttgacaac |
702875 |
T |
|
| Q |
101 |
aatgatatatacatatataagtacaacatattatttaattatctaatgattttgttttgcagtttttgtgaatggcaaagtctgcaaggatccaaagctt |
200 |
Q |
| |
|
| ||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
702874 |
attgatatatacatatataagcagaacatattatctaattatctaatgattttgttttgcagtttttgtgaatggcaaattttgcaaggatccaaagctt |
702775 |
T |
|
| Q |
201 |
gctacaccaaatgatttctttttctcagt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
702774 |
gctacaccaaatgatttctttttctcagt |
702746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 712464 - 712695
Alignment:
| Q |
1 |
ttaacacttctttatttatttttactcgtttggttgaatctgttgaaccaattaaactatgatacaaaagtttcacgggttcgatctcatgtttgacaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
712464 |
ttaacacttctttatttatttttactcgtttggttgaatctgttgaaccaattaaactatgatacaaaagtttcacgggtttgatctcatgtatgacaac |
712563 |
T |
|
| Q |
101 |
aatgatatatacatatataagtacaacatattatttaattatctaatgattttgttttgcagtttttgtgaatggcaaagtctgcaaggatccaaagctt |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
712564 |
tttgatatatacatatataagtagaacatattatttaattatctaatgattttgttttgcagtttttgtgaatggcaaattttgcaaggatccaaagctt |
712663 |
T |
|
| Q |
201 |
gctacaccaaatgatttctttttctcagtgaa |
232 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |
|
|
| T |
712664 |
gctacaccaaatgatttttttttctcagtgaa |
712695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 718133 - 718048
Alignment:
| Q |
144 |
taatgattttgttttgcagtttttgtgaatggcaaagtctgcaaggatccaaagcttgctacaccaaatgatttctttttctcagt |
229 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
718133 |
taatgaatttgttttgcagtttttgtgaatggcaaagtctgcaaggatccaaagcttgctacaccaaatgatttctttttctcagt |
718048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 711221 - 711012
Alignment:
| Q |
11 |
tttatttatttttactcgtttggttgaatctgttgaaccaattaaactatgatacaaaagtttcacgggttcgatctcatgtttgacaacaatgatatat |
110 |
Q |
| |
|
|||||||||||| ||||| |||||| || ||| | |||| ||| ||||||||||||| | ||||||||| |||||||||| | |||||| | |||||| |
|
|
| T |
711221 |
tttatttattttgactcggttggtttaacctgataaaccgattgaactatgatacaataacttcacgggt--gatctcatgtctaacaacattcatatat |
711124 |
T |
|
| Q |
111 |
acatatataagtacaacatattatttaattatctaatgattttgttttgcagtttttgtgaatggcaaagtctgcaaggatccaaagcttgctacaccaa |
210 |
Q |
| |
|
|||||| |||||||||||||| | |||||||| ||||||||| |||||||| |||||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
711123 |
ccatatagg---------tattatttaattatatgatgatttt-ttttgcagtgtttgtgaacggcaaattctgtaagaatccaaagcttgctacaccaa |
711034 |
T |
|
| Q |
211 |
atgatttctttttctcagtgaa |
232 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
711033 |
atgatttctttttctcagtgaa |
711012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University