View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12842_low_3 (Length: 579)
Name: NF12842_low_3
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12842_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 23 - 571
Target Start/End: Complemental strand, 12122924 - 12122378
Alignment:
| Q |
23 |
agtagttgtagggctaattcgagaagttagagtattaggtaagaggcaaatactcacccaatagatttagnnnnnnnctcaccaccatgattaatcgaac |
122 |
Q |
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| T |
12122924 |
agtagttgtagggctaattcgagaagttcgagtattaggtaagaggcaaatactcacccaatagatttagtttatttttcaccaccatgattaatcgaac |
12122825 |
T |
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| Q |
123 |
gaaatacgcgtgttttaagtgatttatattaccaacattgtgtgaaacaaatggtagaggcttgaatcgtttcaccatttggttcaaagttcgatctttg |
222 |
Q |
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| T |
12122824 |
gaaatacgcgt--tttaagtgatttatattgccaacattgtgtgacacaaatggtagaggcttgaatcgtttcaccatttgattcaaagttcgatctttg |
12122727 |
T |
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| Q |
223 |
gtcgatccgcatggaaaaacatgcgttgggagtagtcagttctttaaatggatctcaattatctcgaagaattggcatttacatttgtacgtcagagata |
322 |
Q |
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| T |
12122726 |
gtcgatacgcatggaaaaacatgtgttggaagtagtcagttctttaaatggatctcaattatctcgaagaattggcatttacatttgtacgtcaaagata |
12122627 |
T |
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| Q |
323 |
cctagtttaccaaccaaaaagttgattcatacttgtttgtactaagatgtattgtgtggtttagcttaaacttagagatgtacttgtacatgaaagtaaa |
422 |
Q |
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| T |
12122626 |
cctagtttaccaaccaaaaagttgattcatacttgtttgtactgagatgtattgtgtggtttagcttaaacttagagatgtacttgtacatgaaagtaaa |
12122527 |
T |
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| Q |
423 |
gagaaattggtgacaacttccgtgaattctgttacgtatatggtcctattgatactcaaatttattgtaatttgaaacttgtaagatttttgtttggtta |
522 |
Q |
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| T |
12122526 |
gagaaattggtgacaacttccgtgaattctgttacgtatctggtcctattgatgctcaaatgtattgtaatttgaaacttgtaagatttttgtttggtta |
12122427 |
T |
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| Q |
523 |
gatatacaaagtgcatactattacattagacggacccggattctctgct |
571 |
Q |
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| T |
12122426 |
gatatacaaagtgcatactattacattagacggacccggattctctgct |
12122378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 295
Target Start/End: Original strand, 54618727 - 54618756
Alignment:
| Q |
266 |
ttaaatggatctcaattatctcgaagaatt |
295 |
Q |
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| T |
54618727 |
ttaaatggatctcaattatctcgaagaatt |
54618756 |
T |
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