View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12842_low_30 (Length: 239)
Name: NF12842_low_30
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12842_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 40253983 - 40253770
Alignment:
| Q |
10 |
aagcaaaggaaggagcaacaatctcaagctcgccgagttttcaaccaaaaccaagagatcaaaagagagagtggaaattcggtatggcctattggattta |
109 |
Q |
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| T |
40253983 |
aagcaaaggaaggagcaacaatctcaagctcgccgagttttcaaccaaaaccaagagatcaaaagagagagtggaaattcggtatggcctattggattta |
40253884 |
T |
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| Q |
110 |
tcggtcaaactccaaattattggccaacacagcacaattcctttcccaatattccagtaacaaatccttcttccatccaaaactataacctcaaggaagt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40253883 |
tcggtcaaactccaaattattggccaacacagcacaattcctttcccaatattccagtaacaaatccttcttccatccaaaactataacctcaaggaagt |
40253784 |
T |
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| Q |
210 |
tgaattctatgatg |
223 |
Q |
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|||||||||||||| |
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| T |
40253783 |
tgaattctatgatg |
40253770 |
T |
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