View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12842_low_32 (Length: 231)
Name: NF12842_low_32
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12842_low_32 |
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| [»] scaffold0999 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 30 - 218
Target Start/End: Complemental strand, 13153800 - 13153609
Alignment:
| Q |
30 |
gtttgttcaatgttaaaagctttcaagcttaacacactggnnnnnnnnnn---ggataagtcttggtaaactgacctatgaggacccatgaaaacatcgg |
126 |
Q |
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| T |
13153800 |
gtttgttcaatgttaaaagctatcaagcttaaaacactggaaaaaaaaaaaaaggataagtcttggaaaactgacctatgaggacccatgaaaacatcgg |
13153701 |
T |
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| Q |
127 |
tatccaagaactaaattgtctattgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctccacagg |
218 |
Q |
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| T |
13153700 |
tatccaagaactaaattgtctattgatggacgaattgacaggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctccacagg |
13153609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0999 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0999
Description:
Target: scaffold0999; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 3080 - 2875
Alignment:
| Q |
15 |
ggacatcacaagaaagtttgttcaatgttaaaagctttcaagcttaacacactggnnnnnnnnnn---ggataagtcttggtaaactgacctatgaggac |
111 |
Q |
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| T |
3080 |
ggacatgacaagaaagtttgttcaatgttaaaagctatcaagcttaaaacactggaaaaaaaaaaaaaggataagtcttggaaaactgacctatgaggac |
2981 |
T |
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| Q |
112 |
ccatgaaaacatcggtatccaagaactaaattgtctattgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtct |
211 |
Q |
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| T |
2980 |
ccatgaaaacatggttatccaagaactaaattgtctattgatggatgaattgacaggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtct |
2881 |
T |
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| Q |
212 |
ccacag |
217 |
Q |
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| T |
2880 |
ccacag |
2875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 13528944 - 13529008
Alignment:
| Q |
150 |
tgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctcca |
214 |
Q |
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| T |
13528944 |
tgatgggcgaattgataagtgcaccaaatcataataagtaataaagtagtaagttatcgtctcca |
13529008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 13618483 - 13618547
Alignment:
| Q |
150 |
tgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctcca |
214 |
Q |
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| T |
13618483 |
tgatgggcgaattgataagtgcaccaaatcataataagtaataaagtagtaagttatcgtctcca |
13618547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 25367789 - 25367745
Alignment:
| Q |
150 |
tgatggacgaattgataggtgcaccaaatcaaaacaagtaataaa |
194 |
Q |
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| T |
25367789 |
tgatggacgaattgacaagtgcaccaaatcgaaacaagtaataaa |
25367745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 23854063 - 23854113
Alignment:
| Q |
168 |
gtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctccacagg |
218 |
Q |
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| T |
23854063 |
gtgcaccaaatcataacaagtaataaagtagtaaattattgtctccacagg |
23854113 |
T |
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