View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12842_low_33 (Length: 226)

Name: NF12842_low_33
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12842_low_33
NF12842_low_33
[»] chr4 (5 HSPs)
chr4 (18-116)||(37809333-37809431)
chr4 (35-112)||(37646380-37646457)
chr4 (35-112)||(37814386-37814463)
chr4 (114-181)||(37809461-37809529)
chr4 (31-64)||(51590193-51590226)


Alignment Details
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 37809333 - 37809431
Alignment:
Q  18 agatgttctttattgaatctttattgtaattgcatgtagcagaatgttagagaatatgattttaatttttaattaataccttcttctaaccttatgact 116  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37809333 agatgttcttaattgaatctgtattgtaattgcatgtagcagaatgttagagaatatgattttaatttttaattaataccttcttctaaccttatgact 37809431  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 37646457 - 37646380
Alignment:
Q  35 tctttattgtaattgcatgtagcagaatgttagagaatatgattttaatttttaattaataccttcttctaaccttat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  37646457 tctttattgtaattgcatgtagcagaatgttagagaatatgattttaatttttaattaataccttctagtaaccttat 37646380  T

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Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 37814386 - 37814463
Alignment:
Q  35 tctttattgtaattgcatgtagcagaatgttagagaatatgattttaatttttaattaataccttcttctaaccttat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  37814386 tctttattgtaattgcatgtagcagaatgttagagaatatgattttaatttttaattaataccttctagtaaccttat 37814463  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 37809461 - 37809529
Alignment:
Q  114 actaactgcctaactccctaactgtcatctgtt-agtaaagttagttagaatgcagtcagttagttaca 181  Q
    |||||||||| |||||||||||||||| | ||| || |||||| ||||||||||| |||||||||||||    
T  37809461 actaactgccgaactccctaactgtcagccgtttagaaaagttggttagaatgcaatcagttagttaca 37809529  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 51590193 - 51590226
Alignment:
Q  31 tgaatctttattgtaattgcatgtagcagaatgt 64  Q
    ||||||||||||||||||||||||| ||||||||    
T  51590193 tgaatctttattgtaattgcatgtaacagaatgt 51590226  T

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