View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12842_low_35 (Length: 222)

Name: NF12842_low_35
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12842_low_35
NF12842_low_35
[»] chr1 (3 HSPs)
chr1 (73-202)||(10033444-10033573)
chr1 (1-74)||(10034274-10034347)
chr1 (2-74)||(10020609-10020679)
[»] chr3 (2 HSPs)
chr3 (73-169)||(2899284-2899380)
chr3 (169-202)||(8479322-8479355)
[»] chr2 (2 HSPs)
chr2 (79-169)||(32235006-32235096)
chr2 (120-169)||(30418630-30418679)
[»] chr4 (2 HSPs)
chr4 (79-169)||(8656683-8656773)
chr4 (169-202)||(41067694-41067727)
[»] chr5 (1 HSPs)
chr5 (169-202)||(19936845-19936878)


Alignment Details
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 73 - 202
Target Start/End: Complemental strand, 10033573 - 10033444
Alignment:
Q  73 cgtattcgtgcttatgataaagaaaatgcagccgctccttttgtttgggttttatctaagaaacagcagcaacaagtcaagaggcaacttcagattgatg 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10033573 cgtattcgtgcttatgataaagaaaatgcagccgctccttttgttccggttttatctaagaaacagcagcaacaagtcaagaggcaacttcagattgatg 10033474  T
Q  173 aagtgcagacagacttgcaaatggacaaag 202  Q
    |||||||||||||||||||| |||||||||    
T  10033473 aagtgcagacagacttgcaattggacaaag 10033444  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 10034347 - 10034274
Alignment:
Q  1 ttaacataacaataagggtggtttgaaaaaggcttagagtatcagaaaatgtgcctcgtgtgtaagaaagtacg 74  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10034347 ttaacataacaataagggtggtttgaaaaaggcttagagtaccagaaaatgtgcctcgtgtgtaagaaagtacg 10034274  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 10020679 - 10020609
Alignment:
Q  2 taacataacaataagggtggtttgaaaaaggcttagagtatcagaaaatgtgcctcgtgtgtaagaaagtacg 74  Q
    |||||||||||||||||||| |||||| |  ||||||||| ||| ||||||||||||||||||||||||||||    
T  10020679 taacataacaataagggtggcttgaaaga--cttagagtaccagcaaatgtgcctcgtgtgtaagaaagtacg 10020609  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 2899284 - 2899380
Alignment:
Q  73 cgtattcgtgcttatgataaagaaaatgcagccgctccttttgtttgggttttatctaagaaacagcagcaacaagtcaagaggcaacttcagattg 169  Q
    ||||| ||||| |||||||||||||||||||||   |  ||| ||| ||||||||| ||||||||| ||||||| |||||||  |||||||| ||||    
T  2899284 cgtatccgtgcctatgataaagaaaatgcagccaaccaatttatttcggttttatcaaagaaacagaagcaacatgtcaagaaacaacttcaaattg 2899380  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 8479322 - 8479355
Alignment:
Q  169 gatgaagtgcagacagacttgcaaatggacaaag 202  Q
    ||||||||||||||||||||||| ||||||||||    
T  8479322 gatgaagtgcagacagacttgcagatggacaaag 8479355  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 32235096 - 32235006
Alignment:
Q  79 cgtgcttatgataaagaaaatgcagccgctccttttgtttgggttttatctaagaaacagcagcaacaagtcaagaggcaacttcagattg 169  Q
    ||||| |||||||||||||||||||||   |  ||| ||  ||||||||| ||||||||| |||||||||||||||  |||||||| ||||    
T  32235096 cgtgcctatgataaagaaaatgcagccagccaatttattctggttttatcaaagaaacagaagcaacaagtcaagaaacaacttcaaattg 32235006  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 30418630 - 30418679
Alignment:
Q  120 ggttttatctaagaaacagcagcaacaagtcaagaggcaacttcagattg 169  Q
    ||||||||| ||||||||| |||||||||||||||  |||||||| ||||    
T  30418630 ggttttatcaaagaaacagaagcaacaagtcaagaaacaacttcaaattg 30418679  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 8656773 - 8656683
Alignment:
Q  79 cgtgcttatgataaagaaaatgcagccgctccttttgtttgggttttatctaagaaacagcagcaacaagtcaagaggcaacttcagattg 169  Q
    ||||| |||||||||||||||||||||   |  ||| ||   |||||||| ||||||||| |||||||||||||||  |||||||| ||||    
T  8656773 cgtgcctatgataaagaaaatgcagccagccaatttattccagttttatcaaagaaacagaagcaacaagtcaagaaacaacttcaaattg 8656683  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 41067694 - 41067727
Alignment:
Q  169 gatgaagtgcagacagacttgcaaatggacaaag 202  Q
    ||||||||||||||||||||||| ||||||||||    
T  41067694 gatgaagtgcagacagacttgcagatggacaaag 41067727  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 19936878 - 19936845
Alignment:
Q  169 gatgaagtgcagacagacttgcaaatggacaaag 202  Q
    ||||||||||||||||||||||| ||||||||||    
T  19936878 gatgaagtgcagacagacttgcagatggacaaag 19936845  T

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