View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12842_low_37 (Length: 217)

Name: NF12842_low_37

Description: NF12842

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF12842_low_37

[»] chr4 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 158; E-Value: 3e-84

Query Start/End: Original strand, 16 - 204

Target Start/End: Original strand, 40819328 - 40819517

Alignment:

Q	16	aaaaatgtaatttatttggattatatacctttt-ttaggcaaaataaattcatatcatttcattgaagataataataatatcaatataatggcgaggaga	114	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40819328	aaaaatgtaatttatttggattatatacctttttttaggcaaaataaattcatatcatttcattcaagataataataatatcaatataatggcgaggaga	40819427	T

Q	115	gtaaaagatacgactaatcgctctggctaaattatgaacgatatattagattgtctatggataaaagctagagcaaaactagcaacagtg	204	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	40819428	gtaaaagacacgactaatcgctcttgctaaattatgaacgatctattagattgtttatggataaaagctagagcaaaactagcaatagtg	40819517	T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 46 - 125

Target Start/End: Complemental strand, 32016342 - 32016261

Alignment:

Q	46	tttttaggcaaaataaattcatatcatttcattgaagataataat---aatatcaatataatggcgaggagagtaaaagatac	125	Q
		\|\|\|\|\|\|\|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32016342	tttttagggaaagcaacttcatatcatttcattcaagataatagtatcaatat-aatataatgggaaggagagtaaaagatac	32016261	T

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