View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12842_low_39 (Length: 203)
Name: NF12842_low_39
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12842_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 35612522 - 35612691
Alignment:
| Q |
15 |
caaagggagctaccataaatactcatgtacattgaattcgaagag-acctaagcattacatcaaatcatatttaacacaatagatacaatcatacaacca |
113 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35612522 |
caaagggagctaccataaatactcatgtacactgaatttgaagaggacctaagcattacatcaaatcatatttaacacaatagattcaatcatacaacca |
35612621 |
T |
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| Q |
114 |
tattacaaacattgcccctgaatcatggtgcatgcatgcatcaccccaatcatcggttgggaagtgggga |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
35612622 |
tattacaaacattgcccctgaatcatggtgcatgcatgcatcaccccaatcatcggctgagaagtgggga |
35612691 |
T |
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