View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12842_low_4 (Length: 532)
Name: NF12842_low_4
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12842_low_4 |
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| [»] scaffold0009 (1 HSPs) |
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| [»] scaffold0031 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 18 - 512
Target Start/End: Complemental strand, 47651465 - 47650971
Alignment:
| Q |
18 |
aagtttgatttcatgaattgttcatttactacgtttttcctttgatcaattttggtaaaatgtttgattgtataagtggcttgtttatggggtttgtcaa |
117 |
Q |
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| T |
47651465 |
aagtttgatttcatgaattgttcatttactacgtttttcctttgatcaattttggtaaaatgtttgattgcataaatggcttgtttatggggtttgtcaa |
47651366 |
T |
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| Q |
118 |
tgatttgtttccgctggctttctccctcaattaaaatctagggttatttttgtttgactgtgaaggttactaaaaggggaagaattaagtattaatgtaa |
217 |
Q |
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| T |
47651365 |
taatttgtttccgctggctttctccctcaattaaaatctagggttatttttgtttgactgtgaaggttactaaaaggggaagaattaagtattaatgtaa |
47651266 |
T |
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| Q |
218 |
caaatttgtccgtttaatgttttgtggtgactgtggtttggttatgtctgggggttctggccttgggtctttagctctctagcagtttggtgcaggtttt |
317 |
Q |
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| T |
47651265 |
caaatttgtccgtttaatgttttgtggtgactgtggtttggttatgtctgggggttctggccttgggtctttagctctctagcagtttggtgcaggtttt |
47651166 |
T |
|
| Q |
318 |
tactggtgtcgcaatatcaaagttagtgtaatgttcggtttaagtatctctatgtgtcggtgcttcgtagacaagttgtgctgatatggttttgttcgtg |
417 |
Q |
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| T |
47651165 |
tactggtgtcgcaatatcaaagttagtgtaatgttcggtttaagtatctctatgtgtcggtgcttcgtagacaagttgtgctgatatggttttgttcgtg |
47651066 |
T |
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| Q |
418 |
ataattatttgatgatttaatatattttgtcatatattttatttagttatggcacccccaaatcatgattcagagatacaacttccaaattcttc |
512 |
Q |
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| T |
47651065 |
ataattatttgatgatttaatatattttgtcatatattttatttagttatggcacccccaaatcatgattcagagatacaacttccaaattcttc |
47650971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 46 - 203
Target Start/End: Original strand, 169339 - 169496
Alignment:
| Q |
46 |
ctacgtttttcctttgatcaattttggtaaaatgtttgattgtataagtggcttgtttatggggtttgtcaatgatttgtttccgctggctttctccctc |
145 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||| |||||||||| ||||||||||| ||| |
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| T |
169339 |
ctacatttttcctttgatcaattttggtaaaatgtttgattgcatgaatggcttgtttatggggtttgtcaattatttgtttcctctggctttctctctc |
169438 |
T |
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| Q |
146 |
aattaaaatctagggttatttttgtttgactgtgaaggttactaaaaggggaagaatt |
203 |
Q |
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| T |
169439 |
aatcaaaatctagggttatttttgtttgaccgtgactgttgctaaaaggggaataatt |
169496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 24 - 168
Target Start/End: Complemental strand, 93266 - 93122
Alignment:
| Q |
24 |
gatttcatgaattgttcatttactacgtttttcctttgatcaattttggtaaaatgtttgattgtataagtggcttgtttatggggtttgtcaatgattt |
123 |
Q |
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|||||||||||||||| || |||||||||||| ||| |||||||||||||||||||||||||| || | ||| |||||| ||||||||||||| ||||| |
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| T |
93266 |
gatttcatgaattgtttatatactacgtttttttttttatcaattttggtaaaatgtttgattgcatgaatggtttgtttttggggtttgtcaacgattt |
93167 |
T |
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| Q |
124 |
gtttccgctggctttctccctcaattaaaatctagggttattttt |
168 |
Q |
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| T |
93166 |
ttttccgctggctttctctctcaatcaaaatctagggttattttt |
93122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 93100 - 93015
Alignment:
| Q |
153 |
atctagggttatttttgtttgactgtgaaggttactaaaaggggaagaattaagtattaatgtaacaaatttgtccgtttaatgtt |
238 |
Q |
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||||||||||| ||||||||||||||||| ||| ||||||||| ||||||| | |||||||||||||||||||| |||||||||| |
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| T |
93100 |
atctagggttacttttgtttgactgtgaatgttgctaaaagggaaagaattgggaattaatgtaacaaatttgtctgtttaatgtt |
93015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 452 - 512
Target Start/End: Complemental strand, 92663 - 92603
Alignment:
| Q |
452 |
tattttatttagttatggcacccccaaatcatgattcagagatacaacttccaaattcttc |
512 |
Q |
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| T |
92663 |
tattttatttagttatggcaatcccaagtcatgattcagagatgcaacttccaaattcttc |
92603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 16179723 - 16179682
Alignment:
| Q |
46 |
ctacgtttttcctttgatcaattttggtaaaatgtttgattg |
87 |
Q |
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| T |
16179723 |
ctacgtttttcctttgatcaattttggtaaaatgtttgattg |
16179682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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