View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12842_low_7 (Length: 515)
Name: NF12842_low_7
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12842_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 26 - 498
Target Start/End: Complemental strand, 40252358 - 40251888
Alignment:
| Q |
26 |
cttgagaccttgagataagcacgcttcaaaatttcaagtcaactattagaccaaccccaaatgggtaaattgccaacttattatgggacaacatccctaa |
125 |
Q |
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||||||||||||||| |||||| || ||| ||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40252358 |
cttgagaccttgagagaagcacactccaagattccaagtcaactactagaccaaccccaaatggataaattgccaacttattatgggacaacatccctaa |
40252259 |
T |
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| Q |
126 |
aatatctaaaatctatgaatttatttgtaatacttctaaccccggataacaatgcacttctagggtgaaatagttatacacttaagagagaaatccatat |
225 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40252258 |
aatatctaaaatctatcaatttatttgtaatacttctaaccccggatatcaatgcacttctagggtgaaatagttatacacttaagagagaaatccatat |
40252159 |
T |
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| Q |
226 |
tttgtgtttcatacgtctcaaatatgattgcatttttaatagagggaacacacaagtaatcaaaaacataagttaaagttaaattctaagactaaatact |
325 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40252158 |
tttgtgtttcatacgtctcaaatatgattgca--tttaatagagggaacacacaaataatcaaaaacataagttaaagttaaattctaagactaaatact |
40252061 |
T |
|
| Q |
326 |
cataacataccattgattcataattccttgaaaagtatttaaatcatatgcacaccaattctcttctcggagcttcaaacttaacatacnnnnnnncatc |
425 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||| |||| |
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| T |
40252060 |
cataacataccattgattcataattccttaaaaagtatttaaatgatatgcacaccaattctcttctcggagcttcaaacttcatatactttttttcatc |
40251961 |
T |
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| Q |
426 |
aaatacatctgcaactatgtgttgacaaaaatggcaacaatatgatgaattcgttctctgattcctagtattt |
498 |
Q |
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| T |
40251960 |
gaatacatctgcaactatgtgttgacaaaaatggcaacaatatgatgaattcgttccctgattcctagtattt |
40251888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 13771621 - 13771685
Alignment:
| Q |
27 |
ttgagaccttgagataagcacgcttcaaaatttcaagtcaactattagaccaaccccaaatgggt |
91 |
Q |
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||||||||||||||| |||| |||||| || |||| |||| || ||||||||||||||||||| |
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| T |
13771621 |
ttgagaccttgagatgagcaaacttcaagatcccaagccaaccatcagaccaaccccaaatgggt |
13771685 |
T |
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