View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12842_low_8 (Length: 510)
Name: NF12842_low_8
Description: NF12842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12842_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 36707653 - 36707308
Alignment:
| Q |
19 |
agtcctcaattgttttgacataataaattctaattgaaaattagatactgtaccttgtaaatgttgctaattggattagtgaatattaagagggtgcatt |
118 |
Q |
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| T |
36707653 |
agtcctcaattgttttgacataataaattctaattgaaaattagataccgtaccttgtaaatgttgctaattggattagtgaatattaagagggtgcatt |
36707554 |
T |
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| Q |
119 |
gaggtgctggtccaatacccagaacaggtccgcttccaaatagtaaaggcctaatgtacaatgttccttttccccaaggaggcacctacaattccaatta |
218 |
Q |
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| T |
36707553 |
gaggtgctggtccaatacccagaacaggtccgcttccaaatagtaaaggcctaatgtacaatgttccttttccccaaggaggcacctacaattccaatta |
36707454 |
T |
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| Q |
219 |
caaatttgaaataatcaaactcgaactcattagtgcatactccaacttactaa----ctacatgtttggtatcacaatgtattttgtctgaaccatagtg |
314 |
Q |
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| T |
36707453 |
caaatttgaaataatcaaactcgaactcattagtgcatactcgaacttactaactagctacatgtttggtatcacaatgaattttgtctgaaccatagtc |
36707354 |
T |
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| Q |
315 |
actcattatgattctgacaaatacatcgtaataccagacatgcact |
360 |
Q |
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| T |
36707353 |
acttattatgattctgacaaatacatcgtaatatcagacatgcact |
36707308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 400 - 504
Target Start/End: Complemental strand, 36707268 - 36707164
Alignment:
| Q |
400 |
ttagagcaataagtatacccaacgtttatttgcttgaacaacttgttttacagcatcaatgtactgctcaacagaaggtgatggcatcagcagcctctct |
499 |
Q |
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| T |
36707268 |
ttagagcaataagtatacccaacgtttatttgcatgaacaacttgttttacagcatcaatgtactgctcaacagaaggtgatggcatcagcagcctctct |
36707169 |
T |
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| Q |
500 |
gctcc |
504 |
Q |
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| T |
36707168 |
gctcc |
36707164 |
T |
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