View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12843_high_5 (Length: 342)
Name: NF12843_high_5
Description: NF12843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12843_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 28829992 - 28830318
Alignment:
| Q |
1 |
cgcggttcatctctaacagtgaaccgtgccatgttggttaccgcgtcacagctggcatcctatgatgagtttaaggaaaagattttgaaaaatggttgga |
100 |
Q |
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| T |
28829992 |
cgcggttcatctctgacagtgaaccgcgccatgttggttaccgcatcacagctggcatcctatgatgagtttaaggaaaagattttgaaaaatggttgga |
28830091 |
T |
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| Q |
101 |
tgaaggatgggcttgggacccacgtggtagcgagtttttcggcaggttttgtggccgcggttgcatcgaatccagtggatgtgattaagactagggtgat |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28830092 |
tgaaggatgggcttgggacccatgtggtagcgagtttttcggcaggttttgtggccgcggttgcatcgaatccagtggatgtgattaagactagggtgat |
28830191 |
T |
|
| Q |
201 |
gaatatgaaggtggaggctggatcgcctccaccttactccggtgccattgattgtgctttgaagactattcgtgctgagggtcctatggctctttataag |
300 |
Q |
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| T |
28830192 |
gaatatgaaggtggaggctggatcgcctccaccttactccggtgccattgattgtgctttgaagactattcgtgctgagggtcctatggctctttataag |
28830291 |
T |
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| Q |
301 |
ggttttattcctacaattacaaggcag |
327 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
28830292 |
ggttttattcctacaattacaaggcag |
28830318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 106 - 327
Target Start/End: Original strand, 13918855 - 13919076
Alignment:
| Q |
106 |
gatgggcttgggacccacgtggtagcgagtttttcggcaggttttgtggccgcggttgcatcgaatccagtggatgtgattaagactagggtgatgaata |
205 |
Q |
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| T |
13918855 |
gatggccttgggacccatgtgacagctagttttgcagcgggatttgtggcggcggttgcgtcgaatccagtggatgttattaagacaagggtgatgaaca |
13918954 |
T |
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| Q |
206 |
tgaaggtggaggctggatcgcctccaccttactccggtgccattgattgtgctttgaagactattcgtgctgagggtcctatggctctttataagggttt |
305 |
Q |
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||||||||||||||||| | ||||| || | ||||| | ||||||||||||||||| |||||||||||||||||||||||||||| ||||| || |
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| T |
13918955 |
tgaaggtggaggctggaaaggaaccaccctatgctggtgctttggattgtgctttgaagacagttcgtgctgagggtcctatggctctttacaagggatt |
13919054 |
T |
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| Q |
306 |
tattcctacaattacaaggcag |
327 |
Q |
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||||||||||||| |||||||| |
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| T |
13919055 |
tattcctacaatttcaaggcag |
13919076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 46254934 - 46255051
Alignment:
| Q |
97 |
tggatgaaggatgggcttgggacccacgtggtagcgagtttttcggcaggttttgtggccgcggttgcatcgaatccagtggatgtgattaagactaggg |
196 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||| |||| |||||| |||| |||||||| ||||||||| | |||||||| |||||||||| |
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| T |
46254934 |
tggatgaaagatgggtttgggacccacgtggtagcgagttttgcggcgggttttttggcggcggttgcgtcgaatccaattgatgtgataaagactaggg |
46255033 |
T |
|
| Q |
197 |
tgatgaatatgaaggtgg |
214 |
Q |
| |
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| |||| ||||||||||| |
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| T |
46255034 |
ttatgagtatgaaggtgg |
46255051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 46255088 - 46255163
Alignment:
| Q |
248 |
ttgattgtgctttgaagactattcgtgctgagggtcctatggctctttataagggttttattcctacaattacaag |
323 |
Q |
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||||||||||| | |||||| | |||||||| || |||||||||||||||||||||||||||||||||| |||| |
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| T |
46255088 |
ttgattgtgctgttaagactgtacgtgctgaaggggttatggctctttataagggttttattcctacaatttcaag |
46255163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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