View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12843_high_7 (Length: 263)

Name: NF12843_high_7
Description: NF12843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12843_high_7
NF12843_high_7
[»] chr8 (1 HSPs)
chr8 (1-257)||(41126774-41127030)
[»] chr2 (7 HSPs)
chr2 (64-209)||(2350819-2350964)
chr2 (64-224)||(2320929-2321089)
chr2 (64-225)||(2303227-2303388)
chr2 (100-225)||(2309945-2310070)
chr2 (64-225)||(2326782-2326943)
chr2 (64-225)||(2330497-2330658)
chr2 (100-225)||(2293614-2293739)


Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 41127030 - 41126774
Alignment:
Q  1 tttcgatcagcgccaatcacctgatctctaatctcctccacaattttgtcttgcacatgtggatacttcaccaaattagccatgatccactgcagcgccg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41127030 tttcgatcagcgccaatcacctgatctctaatctcctccacaattttgtcttgcacatgtggatacttcaccaaattagccatgatccactggagcgccg 41126931  T
Q  101 tggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcatcgggcaactccaattccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41126930 tggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcctcgggcaactccaattccaa 41126831  T
Q  201 aagagtatctgcataggaaacaacattgtttttgctcaatctcctttcctttgcttc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41126830 aagagtatctgcataggaaacaacattgtttttgctcaatctcctttccttggcttc 41126774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 2350964 - 2350819
Alignment:
Q  64 tacttcaccaaattagccatgatccactgcagcgccgtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcac 163  Q
    |||||||||||||| ||||| ||||| ||||  |||||||| || || ||| | |||||||||||||||||||||||||| || ||||||||||||||||    
T  2350964 tacttcaccaaatttgccataatccattgcaaagccgtggaagtagtatctatcccagcattcaaaaactctgaacaaagactaaccatttcatcttcac 2350865  T
Q  164 tcagcttgcgtttctcatcgggcaactccaattccaaaagagtatc 209  Q
    |||  || ||||||||||| ||||||||||| ||||||||||||||    
T  2350864 tcaatttccgtttctcatcaggcaactccaactccaaaagagtatc 2350819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 224
Target Start/End: Complemental strand, 2321089 - 2320929
Alignment:
Q  64 tacttcaccaaattagccatgatccactgcagcgccgtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcac 163  Q
    |||||||||||||| ||||| ||||||||||  || ||||| || || || || ||| | ||||||||||| ||||||||  | ||||||||||  ||||    
T  2321089 tacttcaccaaattcgccataatccactgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcac 2320990  T
Q  164 tcagcttgcgtttctcatcgggcaactccaattccaaaagagtatctgcataggaaacaac 224  Q
    ||| ||| |||||||| |||||||||||||| || ||||||||||||||||| ||||||||    
T  2320989 tcaactttcgtttctcctcgggcaactccaactctaaaagagtatctgcatacgaaacaac 2320929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 2303388 - 2303227
Alignment:
Q  64 tacttcaccaaattagccatgatccactgcagcgccgtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcac 163  Q
    ||||| |||||||| ||||| ||||| ||||  |  ||||| || || || || ||| |||||| |||||||||||||||  | ||||||||||  ||||    
T  2303388 tacttaaccaaattcgccataatccattgcaaagtagtggaagtagtatccgtcccaccattcagaaactctgaacaaagattaaccatttcattctcac 2303289  T
Q  164 tcagcttgcgtttctcatcgggcaactccaattccaaaagagtatctgcataggaaacaaca 225  Q
    ||| ||| |||||||| |||||||||||||| || | ||||||||||||||| |||||||||    
T  2303288 tcaactttcgtttctcctcgggcaactccaactctagaagagtatctgcatacgaaacaaca 2303227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 100 - 225
Target Start/End: Complemental strand, 2310070 - 2309945
Alignment:
Q  100 gtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcatcgggcaactccaattcca 199  Q
    ||||| || |||||||| ||| | ||||||||||||||||||||  | ||||||||||  ||||||||||| |||||||| || ||| |||| || || |    
T  2310070 gtggaagtagtgtctgtcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactcagcttccgtttctcctcaggctactctaactcta 2309971  T
Q  200 aaagagtatctgcataggaaacaaca 225  Q
    |||||||||||||||| |||||||||    
T  2309970 aaagagtatctgcatatgaaacaaca 2309945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 2326943 - 2326782
Alignment:
Q  64 tacttcaccaaattagccatgatccactgcagcgccgtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcac 163  Q
    |||||||||||||| ||||| ||||| ||||  || ||||| || || ||||| ||||||||||||||||| |||||||| || ||||||||||| |||     
T  2326943 tacttcaccaaattcgccataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcag 2326844  T
Q  164 tcagcttgcgtttctcatcgggcaactccaattccaaaagagtatctgcataggaaacaaca 225  Q
    ||| ||| ||||| ||    ||||||||||| |||||||| |||||  | ||||||||||||    
T  2326843 tcaacttccgtttttccattggcaactccaactccaaaagtgtatccacgtaggaaacaaca 2326782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 2330658 - 2330497
Alignment:
Q  64 tacttcaccaaattagccatgatccactgcagcgccgtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcac 163  Q
    |||||||||||||| ||||| ||||| ||||  || ||||| || || || |||||| | ||||||||||| |||||||| || | ||||||||| ||||    
T  2330658 tacttcaccaaattcgccataatccattgcaaagcggtggaagtagtatccgtgccaccgttcaaaaactccgaacaaagactaatcatttcatcctcac 2330559  T
Q  164 tcagcttgcgtttctcatcgggcaactccaattccaaaagagtatctgcataggaaacaaca 225  Q
    |||  || |||||||| |  ||||||||||| |||| |||||||||| |||| |||||||||    
T  2330558 tcaatttccgtttctcctgaggcaactccaactccataagagtatctacatacgaaacaaca 2330497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 225
Target Start/End: Complemental strand, 2293739 - 2293614
Alignment:
Q  100 gtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcatcgggcaactccaattcca 199  Q
    ||||| || |||||||| ||| | ||||||||||||||||||||  | ||||||||||  ||||||||||| |||||||| || ||| |||| || || |    
T  2293739 gtggaagtagtgtctgtcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactcagcttccgtttctcctcaggccactctaactcta 2293640  T
Q  200 aaagagtatctgcataggaaacaaca 225  Q
    | |||||||||||||| |||||||||    
T  2293639 agagagtatctgcatatgaaacaaca 2293614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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