View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12843_high_8 (Length: 260)
Name: NF12843_high_8
Description: NF12843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12843_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 37930134 - 37930369
Alignment:
| Q |
18 |
attagctctcaaagttttgggattattgcttcttggcagaacaaagaaagcatgggaaagtgagttgcaaaagctcgaaaagcttcctgatcttaaaact |
117 |
Q |
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| T |
37930134 |
attagctctcaaagttttgggattattgcttcttggcagaacaaagaaagcatgggaaagtgagttgcaaaagctcgaaaagcttcctgatcttaaaact |
37930233 |
T |
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| Q |
118 |
ttcaaagtgttgaagttaagttatgatgaacttgacgacgaacaaaaggatatatttgttgacatagcttgtttctatagaggacacttggagaatgttg |
217 |
Q |
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| T |
37930234 |
ttcaaagtgttgaagttaagttatgatgaacttgacggcgaacaaaaggatatatttgttgacatagcttgtttctatagaggacacttggagaatgttg |
37930333 |
T |
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| Q |
218 |
tagcacaaacattggattcttgtggtttctctgctc |
253 |
Q |
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| T |
37930334 |
tagcacaaacattggattcttgtggtttctctgctc |
37930369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 44644265 - 44644034
Alignment:
| Q |
18 |
attagctctcaaagttttgggattattgcttcttggcagaacaaagaaagcatgggaaagtgagttgcaaaagctcgaaaagcttcctgatcttaaaact |
117 |
Q |
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| T |
44644265 |
attagcactcaaagttttgggttttttactttgcggtagaccaaaggaagcatgggaaagtcagttacaaaagctggataagcttcctgagaatgacatt |
44644166 |
T |
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| Q |
118 |
ttcaaagtgttgaagttaagttatgatgaacttgacgacgaacaaaaggatatatttgttgacatagcttgtttctatagaggacacttggagaatgttg |
217 |
Q |
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| T |
44644165 |
ttcgaagtgctgaaattgagttatgtagaacttgatgaagaacagaatgagatatttcttgatatagcttgtttctatagaggacatttggagaatgttg |
44644066 |
T |
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| Q |
218 |
tagcacaaacattggattcttgtggtttctct |
249 |
Q |
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| T |
44644065 |
ttttacaaacactggatagttgtggtttctct |
44644034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 249
Target Start/End: Complemental strand, 37957439 - 37957218
Alignment:
| Q |
28 |
aaagttttgggattattgcttcttggcagaacaaagaaagcatgggaaagtgagttgcaaaagctcgaaaagcttcctgatcttaaaactttcaaagtgt |
127 |
Q |
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| T |
37957439 |
aaagttttgggcaaatttcttcagggcagaaaagaggaagcatgggaaagtcatttgcaaaagctcgaaaagctttcccatgatgaaattttcagtgcgt |
37957340 |
T |
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| Q |
128 |
tgaagttaagttatgatgaacttgacgacgaacaaaaggatatatttgttgacatagcttgtttctatagaggacacttggagaatgttgtagcacaaac |
227 |
Q |
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| T |
37957339 |
tcaagttgagttatgatggacttgacaacgagcaaaaggatatatttcttgacatagcttgcttttatagaggagaacttgagaaccgtgtagttcaaac |
37957240 |
T |
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| Q |
228 |
attggattcttgtggtttctct |
249 |
Q |
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| T |
37957239 |
attggattattgtggtttctct |
37957218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 252
Target Start/End: Original strand, 25721732 - 25721951
Alignment:
| Q |
33 |
tttgggattattgcttcttggcagaacaaagaaagcatgggaaagtgagttgcaaaagctcgaaaagcttcctgatcttaaaactttcaaagtgttgaag |
132 |
Q |
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|||||| |||||||||| ||| ||||||| | | |||||||||||||| ||||||||| | || || |||||||| | ||||| ||||||||||| |
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| T |
25721732 |
tttggggttattgcttcatggtagaacaagggatgcatgggaaagtgaattgcaaaagttgcaagagtttcctgatgaggatacttttaaagtgttgaaa |
25721831 |
T |
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| Q |
133 |
ttaagttatgatgaacttgacgacgaacaaaaggatatatttgttgacatagcttgtttctatagaggacacttggagaatgttgtagcacaaacattgg |
232 |
Q |
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| T |
25721832 |
ttaagttatgactcgcttgatgaccgacagaagaatatgtttcttgacatcgcttgcttctatactggacatttggtgaatgatgttgcacgaacactag |
25721931 |
T |
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| Q |
233 |
attcttgtggtttctctgct |
252 |
Q |
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| T |
25721932 |
atagttgtggtttctctgct |
25721951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 19869499 - 19869575
Alignment:
| Q |
127 |
ttgaagttaagttatgatgaacttgacgacgaacaaaaggatatatttgttgacatagcttgtttctatagaggaca |
203 |
Q |
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| T |
19869499 |
ttgaaattaagttacgatgggcttgatgatgagcagaaggatatatttcttgacatagcttgcttctgtaggggaca |
19869575 |
T |
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