View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12843_low_1 (Length: 850)
Name: NF12843_low_1
Description: NF12843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12843_low_1 |
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| [»] scaffold0179 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 599; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 19 - 625
Target Start/End: Complemental strand, 894129 - 893523
Alignment:
| Q |
19 |
ggaaccgcttgatttttaaagagtaaaaaagataaccacccctattttccacctgtgtcttttcaagttgagggtattttttggaacaaaaataggccac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
894129 |
ggaaccgcttgatttttaaagagtaaaaaagataaccacccctattttccacctgtgtcttttcaagttgagggtattttttggaacaaaaataggccac |
894030 |
T |
|
| Q |
119 |
actaaattgatgttttgcctttattaatagcaagcatagatagatgattcaatttagttttaattctgattaattgatttgcgggaattacatgtgattt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
894029 |
actaaattgatgttttgcctttattaatagcaagcatagatagatgattcaatttagatttaattctgattaatttatttgcgggaattacatgtgattt |
893930 |
T |
|
| Q |
219 |
attgatgtcgttgtgactatggttgttcatgctctttcctcttaaaatagacggacagttacggtgcatttcggtttttaatctctcttatatatttctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
893929 |
attgatgtcgttgtgactatggttgttcatgctctttcctcttaaaatagacggacagttacggtgcatttcggtttttaatctctcttatatatttctt |
893830 |
T |
|
| Q |
319 |
tatttagttagatttattcagaaattgttgaattcatatgttgattcaaatcctgtaatatcatgttatgtgatttactgtttaattcatttgtttcaat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
893829 |
tatttagttagatttattcagaaattgttgaattcatatgttgattcaaatcctgtaatatcatgttatgtgatttactgtttaattcatttgtttcaat |
893730 |
T |
|
| Q |
419 |
ttaattatctttgtttttcccatctcatgtctcgggtttatttaatttctctgatttttcttctaattcttctgttgtattttcaaaatcaatattttaa |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
893729 |
ttaattatctttgtttttcccatctcatgtctcgggtttatttaatttctctgatttttcttctaattcttctgttgtattttcaaaatcaatattttaa |
893630 |
T |
|
| Q |
519 |
cttttacacttctcttttctgaacaaaaagtgtagttttagaaaacatgcgcatctttgagagcaatgagtatggtacttatgtatatggatacaattag |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
893629 |
cttttacacttctcttttctgaacaaaaagtgtagttttagaaaacatgcgcatctttgagagcaatgagtatggtacttatgtatatggatacaattag |
893530 |
T |
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| Q |
619 |
tgatttc |
625 |
Q |
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||||||| |
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| T |
893529 |
tgatttc |
893523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 733 - 838
Target Start/End: Complemental strand, 893434 - 893328
Alignment:
| Q |
733 |
gaagtacggatgagagccgctacaatnnnnnnn-gacggtagaaaagagagtaaaggttgtgatggaaacggtgcatcaggccggcgcaaggccagccaa |
831 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
893434 |
gaagtacggatgagagccgctacaataaaaaaaagacggtagaaaagagagtaaaggttgtgatggaaacggtgcatcaggccggcgcaaggccagccaa |
893335 |
T |
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| Q |
832 |
cagtgaa |
838 |
Q |
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||||||| |
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| T |
893334 |
cagtgaa |
893328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 766 - 845
Target Start/End: Original strand, 23974 - 24053
Alignment:
| Q |
766 |
gacggtagaaaagagagtaaaggttgtgatggaaacggtgcatcaggccggcgcaaggccagccaacagtgaacgagcag |
845 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||| | || |||||| |||||| |
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| T |
23974 |
gacgggagaaaagagagtaaaggttgtgatggaaacggtgcatcaaaccgacgcaaggccaacaaaaagtgaaagagcag |
24053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 774 - 826
Target Start/End: Original strand, 51092895 - 51092947
Alignment:
| Q |
774 |
aaaagagagtaaaggttgtgatggaaacggtgcatcaggccggcgcaaggcca |
826 |
Q |
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| T |
51092895 |
aaaagagatgaaaggttgtgatggaaacagtgcatcaggccggcgcgaggcca |
51092947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 41374109 - 41374151
Alignment:
| Q |
106 |
aaaaataggccacactaaattgatgttttgcctttattaatag |
148 |
Q |
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|||||||||| |||| ||| ||||||||||||||||||||||| |
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| T |
41374109 |
aaaaataggctacaccaaaatgatgttttgcctttattaatag |
41374151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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