View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12843_low_3 (Length: 446)
Name: NF12843_low_3
Description: NF12843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12843_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 17 - 440
Target Start/End: Original strand, 32812430 - 32812853
Alignment:
| Q |
17 |
aatcaccacacatctatggagatgcaaagcgttatctggactgtatgatcctaacaggtcatcaactatactatatgctgttgacatacgttcaagattg |
116 |
Q |
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| T |
32812430 |
aatcaccacacatctatggagatgcaaagcgttatctgggccgtatgatcctaacaggtcatcaactatactatatgctgttgacatacgttcaagattg |
32812529 |
T |
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| Q |
117 |
aatcctccattgccgagagagtacgctgggaatgcagttttaacggcgtacgcttcggcaaagtgtgaggaattgaaggaaggtgaattctcaaggttgg |
216 |
Q |
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| T |
32812530 |
aatcctccattgccgagagagtacgctgggaatgcagttttaacggcgtaagcttcggcaaagtgtgaggaattgaaggaaggtgaattctcaaggttgg |
32812629 |
T |
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| Q |
217 |
tggagatggtgtgggagggtacaaaaagaatgggtgatgagtatgcaaggtctattattgattggggagaattgtataatggttttccgaatggagagct |
316 |
Q |
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| T |
32812630 |
tggagatggtgtgggagggtacaaaaagaatgggtgatgagtatgcaaggtctattattgattggggagaattgtataatggttttccgaatggagagct |
32812729 |
T |
|
| Q |
317 |
tttggtgtcttcatggtggaggttagggtttgaagaggtggagtatccatgggggaagcctaagtattgttgtccagtagtttatcataagaaggatatt |
416 |
Q |
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| T |
32812730 |
tttggtgtcttcatggtggaggttagggtttgaagaggtggagtatccatgggggaagcctaagtattgttgtccagtggtttatcataagaaggatatt |
32812829 |
T |
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| Q |
417 |
atactattgttcccttcttctcac |
440 |
Q |
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| T |
32812830 |
atactattgttcccttcttttcac |
32812853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 60 - 435
Target Start/End: Original strand, 32830003 - 32830378
Alignment:
| Q |
60 |
tatgatcctaacaggtcatcaactatactatatgctgttgacatacgttcaagattgaatcctccattgccgagagagtacgctgggaatgcagttttaa |
159 |
Q |
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||||||||||| || ||||| | ||| ||||||| ||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||| |
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| T |
32830003 |
tatgatcctaatagatcatctattattttatatgcggttgatatacgttcaagattgaatcctccattgccgagagcgtacactgggaatgcagtattaa |
32830102 |
T |
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| Q |
160 |
cggcgtacgcttcggcaaagtgtgaggaattgaaggaaggtgaattctcaaggttggtggagatggtgtgggagggtacaaaaagaatgggtgatgagta |
259 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| ||||||| ||||||| || |
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| T |
32830103 |
cagcgtacgcttcggcaaagtgtgaggaattgaaggaaggtgaattttcaaggttggtggagatggtggaagagggttcaagaagaatgagtgatgaata |
32830202 |
T |
|
| Q |
260 |
tgcaaggtctattattgattggggagaattgtataatggttttccgaatggagagcttttggtgtcttcatggtggaggttagggtttgaagaggtggag |
359 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32830203 |
tgcaagatctattattgattggggagagttgtataatggttttccaaatggggatgttttggtgtcttcatggtggaggctagggtttgaagaggtggag |
32830302 |
T |
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| Q |
360 |
tatccatgggggaagcctaagtattgttgtccagtagtttatcataagaaggatattatactattgttcccttctt |
435 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||| || ||||||| |
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| T |
32830303 |
tatccatgggggaagcctaagtattgttgtcctgtggtttatcataggaaggatattatactattatttccttctt |
32830378 |
T |
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