View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12843_low_4 (Length: 383)
Name: NF12843_low_4
Description: NF12843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12843_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 371
Target Start/End: Complemental strand, 31706843 - 31706491
Alignment:
| Q |
19 |
gtaataacaacagtagttctagcactagtgaaagtggaggagaggttatcaatgcagataattttctaagtacttgcagccaagaacttcttgctagagg |
118 |
Q |
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| T |
31706843 |
gtaataacaacagtagttctagcactagtgaaagtggaggagaggttatcaatgcagataattttctgagtacttgcagccaagaacttcttgctagagg |
31706744 |
T |
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| Q |
119 |
aactgaattactcaaacgaactcgcaaaggtaattttaataaatcgagttttgagacactaatacttgttttcatttgcaaaattgcaaaatgattaaac |
218 |
Q |
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| T |
31706743 |
aactgaattactcaaacgaactcgcaaaggtaattttaataaatcgagttttgagacactaatacttgttttcatttgcaaaattgcaaaatgattaaac |
31706644 |
T |
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| Q |
219 |
tatatttggtgattgatatttgtaggtgatcttcactcgaaaatagtttctgtttatatacatcgaaccggccaggtaattttttgttctttcatatttt |
318 |
Q |
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| T |
31706643 |
tatatttggtgattgatgtatgtaggtgatcttcactggaaaatagtttctgtttatatacatcgaaccggccaggtaattttttgttctttcatatttt |
31706544 |
T |
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| Q |
319 |
agtagaaattgaaatatagttggttagtccattcatcaaatgctttcattcat |
371 |
Q |
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| T |
31706543 |
agtagaaattgaaatatagttggttagtccattcatcaaatgcttgcattcat |
31706491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 38269424 - 38269485
Alignment:
| Q |
242 |
aggtgatcttcactcgaaaatagtttctgtttatatacatcgaaccggccaggtaatttttt |
303 |
Q |
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| T |
38269424 |
aggtgatctacactggaaaatagtttctgtttacatacatcgaacgggacatgtaaattttt |
38269485 |
T |
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