View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12843_low_7 (Length: 284)
Name: NF12843_low_7
Description: NF12843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12843_low_7 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 29597652 - 29597919
Alignment:
| Q |
17 |
aggcggtccagcaaaacagcaatagttggttcagtatatggtgacactaaattaacagcaccaggagggggcaacaatttcctgtatgtctcagtagcaa |
116 |
Q |
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| T |
29597652 |
aggcggtccagcaaaacagcaatagttggttcagtatatcgtgacactaaattaacagcaccaggagggggcaacaatttcctgtatgtctcagtagcaa |
29597751 |
T |
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| Q |
117 |
gatcaagcgagataatcgcaaatttctcaacagtaaaatcctttggataaatggaaatccagttaacagtgccactcaaatgcactgcttggttcacata |
216 |
Q |
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| T |
29597752 |
gatcaagcgagataatcacaaatttctcaacagtaacatccttcagataaatggatatccagttaacagtgccactcaaatgcactccttggttcacata |
29597851 |
T |
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| Q |
217 |
actacagccaagggtatcaagaaggttataaggagtaaaacttgcaatttttctccaaatattatcac |
284 |
Q |
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| T |
29597852 |
actacagccaagggtatcaagaaggttataaggagtaaaacttacaatttttctccaaatattatcac |
29597919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 34 - 284
Target Start/End: Complemental strand, 29642312 - 29642059
Alignment:
| Q |
34 |
agcaatagttggttcagtatatggtgacactaaattaacagcaccaggagggggcaacaatttcctgtatgtctcagtagcaagatcaagcgagataatc |
133 |
Q |
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| T |
29642312 |
agcaatagttggttcagtatatggtggcactaaattaactgctccaggagggggtagcagtttcttgtatgtctcggtaccaagatcaagcgagataatc |
29642213 |
T |
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| Q |
134 |
gcaaatttctcaacagtaaaatcctttggataaatggaaatccagttaacagtgccactcaaatgcactgc---ttggttcacataactacagccaaggg |
230 |
Q |
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| T |
29642212 |
gcaaatttatcaagagtaacatcctccggataaatggaaatccaattaacagtgccactcaaatacactccttgttggttcacaccatcatggccaaggg |
29642113 |
T |
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| Q |
231 |
tatcaagaaggttataaggagtaaaacttgcaatttttctccaaatattatcac |
284 |
Q |
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| T |
29642112 |
tatcaacaaggttataaggagtaaaatttgcaatttttctccaaatattatcac |
29642059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 34 - 284
Target Start/End: Complemental strand, 29647629 - 29647377
Alignment:
| Q |
34 |
agcaatagttggttcagtatatggtgacactaaattaacagcaccaggagggggcaacaatttcctgtatgtctcagtagcaagatcaagcgagataatc |
133 |
Q |
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| T |
29647629 |
agcaatagttggttcaatatatggtggcactaaattaactgctccaggagggggtagcagtttcttgtatgtctcggtaccaatatcaagcgagataatc |
29647530 |
T |
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| Q |
134 |
gcaaatttctcaacagtaaaatcctttggataaatggaaatccagttaacagtgccactcaaatgcactgc---ttggttcacataactacagccaaggg |
230 |
Q |
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| T |
29647529 |
gcaaatttatcaagagtaacatcctccggataaatggaaatccaattaacagtgccactcaaatacactccttgttggttcacaacactatggccaaggg |
29647430 |
T |
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| Q |
231 |
tatcaagaaggttataaggagtaaaacttgcaatttttctccaaatattatcac |
284 |
Q |
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| T |
29647429 |
tatcaacaaggttataaggagt-aaacttgcaatttttctccaaatattatcac |
29647377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 19326161 - 19326221
Alignment:
| Q |
99 |
tgtatgtctcagtagcaagatcaagcgagataatcgcaaatttctcaacagtaaaatcctt |
159 |
Q |
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|||||||||||||| |||||||||| ||||||||| ||||| ||| || |||| |||||| |
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| T |
19326161 |
tgtatgtctcagtaccaagatcaagggagataatcataaattgctcgacggtaatatcctt |
19326221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 24254602 - 24254662
Alignment:
| Q |
99 |
tgtatgtctcagtagcaagatcaagcgagataatcgcaaatttctcaacagtaaaatcctt |
159 |
Q |
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|||||||||||||| |||||||||| ||||||||| |||| |||||| |||| |||||| |
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| T |
24254602 |
tgtatgtctcagtaccaagatcaagggagataatcatgaattgctcaacggtaatatcctt |
24254662 |
T |
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