View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12843_low_8 (Length: 280)
Name: NF12843_low_8
Description: NF12843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12843_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 104 - 268
Target Start/End: Original strand, 52182571 - 52182735
Alignment:
| Q |
104 |
ttcatctagttgaggcttttcaaagattggtagctttgaaacgttttggcacacgtcctgctcctaaaatatagggacccaactacttcactttaattaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52182571 |
ttcatctagttgaggcttttcaaagattggtagctttgaaacgttttggcacacgtcctgctcctaaaatatagggacccaactacttcactttaattaa |
52182670 |
T |
|
| Q |
204 |
tttcgacccaaaatcgaacacttcgctcagagattgtaactataaattcttcaatgcagtcagtg |
268 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
52182671 |
tttcgacccaaaatcgaacacttcgctcaaagattgtaactataaattcttcaatgcagtcagtg |
52182735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 52182432 - 52182526
Alignment:
| Q |
1 |
tgtggcagttaaattaattaaggatttctttcgttattttannnnnnnaagaaagaaac-ttattttttactacatacacgtacactgacaatgt |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
52182432 |
tgtggcagttaaattaattaaggatttctttcgttattttatttttttaagaaagaaactttattttttactacatacacgtacactgacaatgt |
52182526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University