View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12844_low_1 (Length: 571)
Name: NF12844_low_1
Description: NF12844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12844_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 18 - 557
Target Start/End: Original strand, 47981832 - 47982371
Alignment:
| Q |
18 |
gtttcgatccaatgtcctcacttttaatcaggtcattgcaatcacaaccttacttctgcttcaatttcttatgattatctgtgtaacattgccagttcag |
117 |
Q |
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| T |
47981832 |
gtttcgatccgatgtcctcacttttaatcaggtcattgcaatcacaaccttacttctgcttcaatttcttatgattatctgtgtaacattgccacttcag |
47981931 |
T |
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| Q |
118 |
attgaagacttttccaacgaccaattatattcaatagtttcatttttattaattattaccggtgtctggtgtctctgtcaatgtttcatagatgattata |
217 |
Q |
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| T |
47981932 |
attgaagacgtgtccaatgaccaattatattcaatagtttcatttttattaattattaccggtgtctggtgtctctgtcagtgtttcatagatgattata |
47982031 |
T |
|
| Q |
218 |
tatgcttgttctcctttttcaactagttgattgaatccatgttcagcacaaatgtgtaacacaaaagttattgactagtggcagatggagtagttgatat |
317 |
Q |
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| T |
47982032 |
tatgcttgttctcctttttcaactagttgattgaatccatgttcagcacaaatgtgtaacacaaaagttattgactagtggcagatggagtagttgatat |
47982131 |
T |
|
| Q |
318 |
attgagcaagttggattagcctaactgtgttttatcaattgtattatttatatgattttctagttgcggataatattttacaagattgttttttgatttt |
417 |
Q |
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| T |
47982132 |
attgagcaagttggattagcctaactgtgttttatcaattgtattatttatatgattttctagttgcggaaaatattttacaagattgttttttgatttt |
47982231 |
T |
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| Q |
418 |
gacagttgattcattagatacgattcatcgtggtattatgatgttgttagatccatctagtacgtagtattaccataattgaattctgatcactaatttc |
517 |
Q |
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| T |
47982232 |
gacagttgattcattagatactattcatcgtggtattatgatgttgttagatccatctagtacgtagtattaccataattgaattctgatcaccaatttc |
47982331 |
T |
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| Q |
518 |
cgctagaaattttttgtcgcaattcttgccttgcacaggt |
557 |
Q |
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| T |
47982332 |
cgctagaaattttttgtcgcaattcttgccttgcacaggt |
47982371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 452 - 542
Target Start/End: Complemental strand, 35117871 - 35117781
Alignment:
| Q |
452 |
attatgatgttgttagatccatctagtacgtagtattaccataattgaattctgatcactaatttccgctagaaattttttgtcgcaattc |
542 |
Q |
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| T |
35117871 |
attatgatgttgttagatccatctagtacgtagtattaccataactgaattctgatcactaatttccacttgaaattttttgttgcaattc |
35117781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 35117945 - 35117867
Alignment:
| Q |
18 |
gtttcgatccaatgtcctcacttttaatcaggtcattgcaatcacaaccttacttctgcttca-atttcttatgattat |
95 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35117945 |
gtttcgatccgatgtcctcacttttattcaggtcattgcaatcacaaccttacttctgcttcatttttcttatgattat |
35117867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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