View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12844_low_2 (Length: 421)
Name: NF12844_low_2
Description: NF12844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12844_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 22 - 410
Target Start/End: Complemental strand, 55099570 - 55099182
Alignment:
| Q |
22 |
atggtatagtatatttatggaaaaatttaattaagtcttcattcgtattttaaaatgacaattagcacgaggcaaataaatatatgaaatgtgacactta |
121 |
Q |
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| T |
55099570 |
atggtatagtatatttatggaaaaatttaattaagtcttcattcgtattttaaaatgacaattagcacgaggcaaataaatatatgaaatgtgacactta |
55099471 |
T |
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| Q |
122 |
acatgagacgggagaaatatgatgcaggtaacaatttgcataggtaattaaaaataaatattgtacttggtttttgaccagccatgtcgttaatcggtta |
221 |
Q |
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| T |
55099470 |
acatgagacgggagaaatatgatgcaggtaacaatttgcataggtaattaaaaataaatattgtacttggtttttgaccagccatgtcgttaatcggtta |
55099371 |
T |
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| Q |
222 |
tgcataccctgtttcactagaacaagaatattaagatgggttcaaaagtgtagaagatgcgcttaaaggctcatgtaaaactgaatttgaagaaacagca |
321 |
Q |
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| T |
55099370 |
tgcataccctgtttcactataacaagaatattaagatgggttcaaaagtgtagaagatgcgcttaaaggctcatgtaaaactgaatttgaagaaacagca |
55099271 |
T |
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| Q |
322 |
atgggacttccttctaactgcaacatgatactccccagtatttcaattaaaattttattgaattcttcttctttaatcatcatcttctt |
410 |
Q |
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| T |
55099270 |
atgggacttccttctaactgcaacatgatactccccagtatttcaattaaaattttcttgaattcttcttctttaatcatcatcttctt |
55099182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 395
Target Start/End: Original strand, 28893622 - 28893750
Alignment:
| Q |
267 |
aagtgtagaagatgcgcttaaaggctcatgtaaaactgaatttgaagaaacagcaatgggacttccttctaactgcaacatgatactccccagtatttca |
366 |
Q |
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| T |
28893622 |
aagtgtagaagaggagcctagaggctcatgcactacagaatttgaagcaactgctataggatttccttccaactgcaacatgatactccccaatatttca |
28893721 |
T |
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| Q |
367 |
attaaaattttattgaattcttcttcttt |
395 |
Q |
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| T |
28893722 |
gttaatattttcttgaattcttcttcttt |
28893750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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