View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12844_low_4 (Length: 340)
Name: NF12844_low_4
Description: NF12844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12844_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 5388065 - 5387743
Alignment:
| Q |
1 |
ctttgtcaaagaaactaagaaatgaagtatttagttaagagacctgccccaatttatgggcactcaaaagtcttataaagaagaaggatgggataggaga |
100 |
Q |
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| T |
5388065 |
ctttgtcaaagaaactaagaaatgaagtatttagttaagagacctgccccaatttatgggcactcaaaagtcttataaagaagaaggatgggataggaga |
5387966 |
T |
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| Q |
101 |
atagagagattcagaatttgacttctttacaatttccacagatggaaaataaattggattaaattaccgattttttgtgtcaacgtattttgtggacatg |
200 |
Q |
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| T |
5387965 |
atagagagattcagaatttgacttcttcacaatttccacagatggaaaataaattggattaaattaccgattttttgtgtcaacgtattttgtggacatg |
5387866 |
T |
|
| Q |
201 |
ccacttttaatcacatgatttgcttgataaaataaaataactttacaaataaaaaacaacggtgttggatcaaacaaactcttacgtgacaaacaaaagt |
300 |
Q |
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| T |
5387865 |
ccacttttaatcacatgatttgcttgataaaataaaataactttacaaagaaaaaacaacggtgttggatcaaacaaactcttacgtgacaaacaaaagt |
5387766 |
T |
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| Q |
301 |
tggaaacttgactaatcatattt |
323 |
Q |
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| T |
5387765 |
tggaaacttgactaatcatattt |
5387743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 5401860 - 5401756
Alignment:
| Q |
15 |
ctaagaaatgaagtatttagttaagagacctgccccaatttatgggcactcaaaagtcttataaagaagaaggatgggataggagaata-gagagattca |
113 |
Q |
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| T |
5401860 |
ctaagaaatgaagtattcaattaagagagcttccccaatttattggcactcaaaagtcttataaagaggaagga-gtgatgggagaatatgagagattca |
5401762 |
T |
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| Q |
114 |
gaattt |
119 |
Q |
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|||||| |
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| T |
5401761 |
gaattt |
5401756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 5401760 - 5401710
Alignment:
| Q |
131 |
aatttccacagatggaaaataaattggattaaattaccgattttttgtgtc |
181 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||| |||| |||| |
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| T |
5401760 |
aatttccacatatggaaaataaattggatttaattaccgatcttttctgtc |
5401710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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