View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12844_low_6 (Length: 296)
Name: NF12844_low_6
Description: NF12844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12844_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 34308312 - 34308562
Alignment:
| Q |
19 |
ccttgcacttgtggtgttgcttatgatctcaaaatgtataatgagcaagacaaagtaattaagtttttgaaaggtttgaatgagcaatatgcgcatgtgc |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34308312 |
ccttgcacttgtggtgttgcttctgatctcaaaaagtataatgagcaagacaaagtaattaagtttttgaaaggtttgaatgagcaatatgcacatgtgc |
34308411 |
T |
|
| Q |
119 |
gctctcagattatgctaattgatcttttgcctgaattggataagactttttctcttgtacttcaacaagaaagacaaacacatattcctgtttttggtga |
218 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34308412 |
gctctcagattatgctaattgatcctttgcctgaattggataagactttttctcttgtacttcaacaagaaagacaaacaaatattcctgtttttggtga |
34308511 |
T |
|
| Q |
219 |
aatccctgttgatcaacaatcagctgttaatcaagttcagcaaaccaattc |
269 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34308512 |
aattcctgttgatcaacaatcagctgttaatcaagttcagcaaaccaattc |
34308562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 4498766 - 4499021
Alignment:
| Q |
19 |
ccttgcacttgtggtgttgcttatgatctcaaaatgtataatgagcaagacaaagtaattaagtttttgaaaggtttgaatgagcaatatgcgcatgtgc |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4498766 |
ccttgcacttgtggtgttgcttctgatctcaaaaagtataatgagcaagacaaagtaattaagtttttgaaaggtttgaatgagcaatatgcacatgtgc |
4498865 |
T |
|
| Q |
119 |
gctctcagattatgctaattgatcttttgcctgaattggataagactttttctcttgtacttcaacaagaaagacaaacacatattcctgtttttggtga |
218 |
Q |
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|
|||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4498866 |
gctctcagattatgctaattaatcctttgcctgaactggataagactttttctcttgtacttcaacaagaaagacaaacacatattcctgtttttggtga |
4498965 |
T |
|
| Q |
219 |
aatccctgttgatcaacaatcagctgttaatcaagttcagcaaaccaattcgaaca |
274 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4498966 |
aattcctgttgatcaacaatcagctgttaatcaagttcagcaaaccaattctaaca |
4499021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 15822318 - 15822573
Alignment:
| Q |
19 |
ccttgcacttgtggtgttgcttatgatctcaaaatgtataatgagcaagacaaagtaattaagtttttgaaaggtttgaatgagcaatatgcgcatgtgc |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
15822318 |
ccttgcacttgtggtgttgcttctgatctcaaaaagtataatgagcaagacaaagtaattaagtttttgaaaggtttgaatgagcaatatgcacatgtgc |
15822417 |
T |
|
| Q |
119 |
gctctcagattatgctaattgatcttttgcctgaattggataagactttttctcttgtacttcaacaagaaagacaaacacatattcctgtttttggtga |
218 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15822418 |
gctctcagattatgctaattaatcctttgcctgaactggataagactttttctcttgtacttcaacaagaaagacaaacacatattcctgtttttggtga |
15822517 |
T |
|
| Q |
219 |
aatccctgttgatcaacaatcagctgttaatcaagttcagcaaaccaattcgaaca |
274 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
15822518 |
aattcctgttgatcaacaatcagctgttaatcaagttcagcaaaccaattctaaca |
15822573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 26086886 - 26086631
Alignment:
| Q |
19 |
ccttgcacttgtggtgttgcttatgatctcaaaatgtataatgagcaagacaaagtaattaagtttttgaaaggtttgaatgagcaatatgcgcatgtgc |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
26086886 |
ccttgcacttgtggtgttgcttctgatctcaaaaagtataatgagcaagacaaagtaattaagtttttgaaaggtttgaatgagcaatatgcacatgtgc |
26086787 |
T |
|
| Q |
119 |
gctctcagattatgctaattgatcttttgcctgaattggataagactttttctcttgtacttcaacaagaaagacaaacacatattcctgtttttggtga |
218 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26086786 |
gctctcagattatgctaattaatcctttgcctgaactggataagactttttctcttgtacttcaacaagaaagacaaacacatattcctgtttttggtga |
26086687 |
T |
|
| Q |
219 |
aatccctgttgatcaacaatcagctgttaatcaagttcagcaaaccaattcgaaca |
274 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26086686 |
aattcctgttgatcaacaatcagctgttaatcaagttcagcaaaccaattctaaca |
26086631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 26110673 - 26110418
Alignment:
| Q |
19 |
ccttgcacttgtggtgttgcttatgatctcaaaatgtataatgagcaagacaaagtaattaagtttttgaaaggtttgaatgagcaatatgcgcatgtgc |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26110673 |
ccttgcacttgtggtgttgcttctgatctcaaaaagtataatgagcaagacaaagtaattaagtttttgaaaggtttgaatgagcaatatgcacatgtgc |
26110574 |
T |
|
| Q |
119 |
gctctcagattatgctaattgatcttttgcctgaattggataagactttttctcttgtacttcaacaagaaagacaaacacatattcctgtttttggtga |
218 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26110573 |
gctctcagattatgctaattaatcctttgcctgaactggataagactttttctcttgtacttcaacaagaaagacaaacacatattcctgtttttggtga |
26110474 |
T |
|
| Q |
219 |
aatccctgttgatcaacaatcagctgttaatcaagttcagcaaaccaattcgaaca |
274 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26110473 |
aattcctgttgatcaacaatcagctgttaatcaagttcagcaaaccaattctaaca |
26110418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 30282887 - 30282632
Alignment:
| Q |
19 |
ccttgcacttgtggtgttgcttatgatctcaaaatgtataatgagcaagacaaagtaattaagtttttgaaaggtttgaatgagcaatatgcgcatgtgc |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
30282887 |
ccttgcacttgtggtgttgcttctgatctcaaaaagtataatgagcaagacaaagtaattaagtttttgaaaggtttgaatgagcaatatgcacatgtgc |
30282788 |
T |
|
| Q |
119 |
gctctcagattatgctaattgatcttttgcctgaattggataagactttttctcttgtacttcaacaagaaagacaaacacatattcctgtttttggtga |
218 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30282787 |
gctctcagattatgctaattaatcctttgcctgaactggataagactttttctcttgtacttcaacaagaaagacaaacacatattcctgtttttggtga |
30282688 |
T |
|
| Q |
219 |
aatccctgttgatcaacaatcagctgttaatcaagttcagcaaaccaattcgaaca |
274 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30282687 |
aattcctgttgatcaacaatcagctgttaatcaagttcagcaaaccaattctaaca |
30282632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 552475 - 552220
Alignment:
| Q |
19 |
ccttgcacttgtggtgttgcttatgatctcaaaatgtataatgagcaagacaaagtaattaagtttttgaaaggtttgaatgagcaatatgcgcatgtgc |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
552475 |
ccttgcacttgtggtgttgcttctgatctcaaaaagtataatgagcaagacaaagtaattaagtttttgaaaggtttgaatgagcaatatgcacatgtgc |
552376 |
T |
|
| Q |
119 |
gctctcagattatgctaattgatcttttgcctgaattggataagactttttctcttgtacttcaacaagaaagacaaacacatattcctgtttttggtga |
218 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
552375 |
gctctcagattatgctaattaatcctttgcctgaactggataagactttttctcttgtacttcaacaagaaagacaaacacatattcctgtttttggtga |
552276 |
T |
|
| Q |
219 |
aatccctgttgatcaacaatcagctgttaatcaagttcagcaaaccaattcgaaca |
274 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
552275 |
aattcctgttgatcaacaatcaactgttaatcaagttcagcaaaccaattctaaca |
552220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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