View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12844_low_7 (Length: 280)
Name: NF12844_low_7
Description: NF12844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12844_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 34994595 - 34994341
Alignment:
| Q |
9 |
agcagagagaaatagtactatttattatttaataattcagaatcagtataattattgaattgtttcaaagaaactaaactctggaaataatctaataaaa |
108 |
Q |
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| T |
34994595 |
agcaaagagaaatagtactatttattatttaataattcagaatcagtataattattgaattgtttcaaagaaactaaactctggaaataatctaataaaa |
34994496 |
T |
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| Q |
109 |
aatttcaattgagtgacataatctaagatatggtttgttatttgattgcaaaatgaaactttacggtgaagaaaatgtcgaaaatgagttgtgaactgct |
208 |
Q |
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| T |
34994495 |
a-tttcaattgagtgacataatctaagatatggtttgttatttgattgcaaaatgaaactttacggtgaagaaaatgtcgaaaatgagttgtgaactgct |
34994397 |
T |
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| Q |
209 |
gcatatggtccaaaccagacgacgacaagtcacaggtctttggtcaacaacagaag |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34994396 |
gcatatggtccaaaccagacgacgacaagtcacaggtctttggtcaacaacagaag |
34994341 |
T |
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