View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12844_low_8 (Length: 247)
Name: NF12844_low_8
Description: NF12844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12844_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 39545264 - 39545023
Alignment:
| Q |
1 |
tgtgtattggaaaagtagaactcaccgtgaatacgaccaacgaagaaatagtggcagctgcactaccaatgcaagagcattggcttccattatcaaacct |
100 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||||| ||||||||||||| ||||| || |||||||||||||| ||||||||| |||||||||| |
|
|
| T |
39545264 |
tgtgtattggaaaaggagaattcaccgtgaaagttaccaacaaagaaatagtggctgctgctctgccaatgcaagagcactggcttccactatcaaacct |
39545165 |
T |
|
| Q |
101 |
tgacctaattcttccccctgttgatgttagtgtgttcttttgttacaataatcctataattactactggcacccaccataacattgtgggatgtttgaaa |
200 |
Q |
| |
|
||| ||||||||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
39545164 |
tgatttaattcttcccccagttgatgttggtgtgttcttctgttacaaaaatcctataattactactgccacccaccatagcattgtgggatgtttgaaa |
39545065 |
T |
|
| Q |
201 |
aattctttagctaaggctcttgtttcttattatgcctttgct |
242 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
39545064 |
aattctttaactgaggctcttgtttcttattatgcctttgct |
39545023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 39554578 - 39554337
Alignment:
| Q |
1 |
tgtgtattggaaaagtagaactcaccgtgaatacgaccaacgaagaaatagtggcagctgcactaccaatgcaagagcattggcttccattatcaaacct |
100 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||||| ||||||||||||| ||||| || |||||||||||||| ||||||||| |||||||||| |
|
|
| T |
39554578 |
tgtgtattggaaaaggagaattcaccgtgaaagttaccaacaaagaaatagtggctgctgctctgccaatgcaagagcactggcttccactatcaaacct |
39554479 |
T |
|
| Q |
101 |
tgacctaattcttccccctgttgatgttagtgtgttcttttgttacaataatcctataattactactggcacccaccataacattgtgggatgtttgaaa |
200 |
Q |
| |
|
||| ||||||||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
39554478 |
tgatttaattcttcccccagttgatgttggtgtgttcttctgttacaaaaatcctataattactactgccacccaccatagcattgtgggatgtttgaaa |
39554379 |
T |
|
| Q |
201 |
aattctttagctaaggctcttgtttcttattatgcctttgct |
242 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
39554378 |
aattctttaactgaggctcttgtttcttattatgcctttgct |
39554337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 229
Target Start/End: Complemental strand, 39587632 - 39587467
Alignment:
| Q |
67 |
caatgcaagagcattggcttccattatcaaaccttgacctaattcttccccctgttgatgttagtgtgttcttttgttacaataatcctataattactac |
166 |
Q |
| |
|
|||||||||| ||| |||| || ||||||| ||||| || | |||||||||||| | || ||||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
39587632 |
caatgcaagaacataggctagcactatcaaatcttgatttactacttccccctgttagtattggtgtgttcttttgctacaaaaatcctatgattactat |
39587533 |
T |
|
| Q |
167 |
tggcacccaccataac---attgtgggatgtttgaaaaattctttagctaaggctcttgtttctta |
229 |
Q |
| |
|
||||||| | ||||| |||||||| || ||||||||||| |||||| | |||||||||||||| |
|
|
| T |
39587532 |
tggcaccaccaataacactattgtggggtgcttgaaaaattccttagctgaagctcttgtttctta |
39587467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University