View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12845_high_2 (Length: 350)
Name: NF12845_high_2
Description: NF12845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12845_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 19347125 - 19347457
Alignment:
| Q |
1 |
atactgtgaagtgtgtttcttgcatgatacacagtatttatatccttgaaaatgttcaaacccatagcaactttcagtaagtactctgtatcaatatctt |
100 |
Q |
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| T |
19347125 |
atactgtgaagtgtgtttcttgcatgatacacagtatttatatctttgaaaatgttcaaacccatagcaactttcagtaagtactctgtatcaatatctt |
19347224 |
T |
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| Q |
101 |
gtagtgtagaagaaagcaagaagatatccttcattgcttgattcactaacaagttgtaactcaactccaaagtagaataagttttcatatccattcctgc |
200 |
Q |
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| T |
19347225 |
gtagtgtagaagaaagcaagaagatatccttcattgcttgactcactaacaagttgtaactcaactccaaagtagaataagttttcatatccattcctgc |
19347324 |
T |
|
| Q |
201 |
atgactattactttctaattgtcgtaatgcatcttcccaaacacgaatatccttatttttcaaacctcttcccactgtcacaataagaagaggcaatcct |
300 |
Q |
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| T |
19347325 |
atgactattactttctaattgtcgtaatgcatcttcccaaacacgaatatccttatttttcaaacctcttcccactgtcacaatgagaagaggcaagcct |
19347424 |
T |
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| Q |
301 |
gcacatttttgggcaacttgaggagctaaactt |
333 |
Q |
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| T |
19347425 |
gcacatttttgggcaacttgaggagctaaactt |
19347457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 240
Target Start/End: Complemental strand, 13503642 - 13503515
Alignment:
| Q |
113 |
aaagcaagaagatatccttcattgcttgattcactaacaagttgtaactcaactccaaagtagaataagttttcatatccattcctgcatgactattact |
212 |
Q |
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| T |
13503642 |
aaagcaagaagagatccttcatttcatcactctctaatgagttgtaactcaattccaaagcagaataagttcccgaatccatctctgtatgatcattact |
13503543 |
T |
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| Q |
213 |
ttctaattgtcgtaatgcatcttcccaa |
240 |
Q |
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| T |
13503542 |
ttgtaatttccttaatgcatctttccaa |
13503515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 321
Target Start/End: Original strand, 15901860 - 15901892
Alignment:
| Q |
289 |
agaggcaatcctgcacatttttgggcaacttga |
321 |
Q |
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| T |
15901860 |
agaggcaaacctgcacatttttgggcaacttga |
15901892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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