View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12845_low_3 (Length: 272)
Name: NF12845_low_3
Description: NF12845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12845_low_3 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 2256 - 2125
Alignment:
| Q |
35 |
atgaatcacggtagaaatcatattcaagaagagagttggaagaagaatcagaagaagatgattctgatacatggttgttgttgatggcagataaagaaac |
134 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2256 |
atgaatcacggtagaaatcatattcaagaagaaagttggaagaagaatcagaagaagatgattctgatacatggctgttgttgatggcagataaagaaac |
2157 |
T |
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| Q |
135 |
tgtgaaacttgaaaaagaatgtattggaacaa |
166 |
Q |
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| T |
2156 |
tgggaaacttgaaaaagaatgtattggaacaa |
2125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 2062 - 2019
Alignment:
| Q |
229 |
aataaaagacataacacaagaatcagaagaattaattttggtag |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2062 |
aataaaagacataacacaagaatcagaagaattaattttggtag |
2019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 3451475 - 3451344
Alignment:
| Q |
35 |
atgaatcacggtagaaatcatattcaagaagagagttggaagaagaatcagaagaagatgattctgatacatggttgttgttgatggcagataaagaaac |
134 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3451475 |
atgaatcacggtagaaatcatattcaagaagaaagttggaagaagaatcagaagaagatgattctgatacatggctgttgttgatggcagataaagaaac |
3451376 |
T |
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| Q |
135 |
tgtgaaacttgaaaaagaatgtattggaacaa |
166 |
Q |
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| T |
3451375 |
tgggaaacttgaaaaagaatgtattggaacaa |
3451344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 3451281 - 3451238
Alignment:
| Q |
229 |
aataaaagacataacacaagaatcagaagaattaattttggtag |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3451281 |
aataaaagacataacacaagaatcagaagaattaattttggtag |
3451238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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