View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12846_high_2 (Length: 517)
Name: NF12846_high_2
Description: NF12846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12846_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-104; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 33 - 355
Target Start/End: Original strand, 4840359 - 4840678
Alignment:
| Q |
33 |
acgtatttactttacttttaaaa-aagaaattgatacggttgtcccacatcggacgtttgagaagcatacggagataacctacccttataaataaagcgc |
131 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
4840359 |
acgtatttactttacttttaaaaaaagaaattgatacagttgtcccacatcggacgtttgagaagcatacagagataacctacccttataaataaagcac |
4840458 |
T |
|
| Q |
132 |
tcaagactatatcaaaaaatagataactgtaagacttttaatttaatttaattctgatgtttaaaagattactgggcattagcaatttcatcatcttctt |
231 |
Q |
| |
|
||||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4840459 |
tcaagactatatcaaaaaatatataaatgtaggac-----atttaatttaattctgatgtttaaaagattactgggcattagcaatttcatcatcttctt |
4840553 |
T |
|
| Q |
232 |
taaaaa-agattcttctatttttaaaggggtaaggatttgtttatatctattagnnnnnnnnccctnnnnnnnntatttcaactaaaagggaggagcaat |
330 |
Q |
| |
|
|||||| |||||||||| ||| ||||||| |||||||||| | ||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
4840554 |
taaaaagagattcttctctttgtaaagggataaggatttgctaatatctattagtttttttttcctaaaaaaaatatttcaactaaaagggaggagcaat |
4840653 |
T |
|
| Q |
331 |
aaagagaagcaaaacaaaagttata |
355 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
4840654 |
aaagagaagcaaaacaaaagttata |
4840678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 4842785 - 4842906
Alignment:
| Q |
33 |
acgtatttactttacttttaaaaaagaaattgatacggttgtcccacatcggacgtttgagaagcatacggagataacctacccttataaataaagcgct |
132 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| | |||||||||||||| ||||||||||||||| |||||| ||||| |||||||||||||||| |
|
|
| T |
4842785 |
acgtatttactatacttttaaaaaagaaagtgatatgactgtcccacatcggaagtttgagaagcatacaaagataagctaccgttataaataaagcgct |
4842884 |
T |
|
| Q |
133 |
caagactatatcaaaaaataga |
154 |
Q |
| |
|
|||||| |||||||| |||||| |
|
|
| T |
4842885 |
caagacaatatcaaagaataga |
4842906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 36 - 134
Target Start/End: Original strand, 4794482 - 4794580
Alignment:
| Q |
36 |
tatttactttacttttaaaaaagaaattgatacggttgtcccacatcggacgtttgagaagcatacggagataacctacccttataaataaagcgctca |
134 |
Q |
| |
|
||||||||||||||| |||||| ||| ||||| ||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
4794482 |
tatttactttactttaaaaaaaaaaagtgatatggttgtctcacatcagacgtttgagaagcatacggagataagctacccttataaataaagtgctca |
4794580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University