View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12846_high_9 (Length: 244)
Name: NF12846_high_9
Description: NF12846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12846_high_9 |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 7332621 - 7332854
Alignment:
| Q |
11 |
cagagaagtgtgtacaacaactgagctgataacaaacactgagaatgaccatgctatcccaaactatcatgggaaagctgaagtttcaagaaatgagtct |
110 |
Q |
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| T |
7332621 |
cagagaagtgtgtacaacaactgagctgataacaaacactgagaatgaccatgctatcccaaactatcatgggaaagctgaagtttcaagaaatgagtct |
7332720 |
T |
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| Q |
111 |
gttctctctcaatctctagaaaattagttgattttatatcgttcaaaaagaggaaagaacggacctctagttaattttatattgttgaaaacgaggaaag |
210 |
Q |
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| T |
7332721 |
gttctctctcaatctctagaaaattagttgattttatatcgttcaaaaagaggaaagaacggacctctagttaattttatattgttgaaaacgaggaaag |
7332820 |
T |
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| Q |
211 |
aaaggacctaggtatcatgaacattcctataatt |
244 |
Q |
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| T |
7332821 |
aaaggacctaggtatcatgaacattcttataatt |
7332854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 39 - 169
Target Start/End: Original strand, 2643329 - 2643460
Alignment:
| Q |
39 |
ataacaaacactgagaatgaccatgctatcccaaactatcatgggaaagctgaag-tttcaagaaatgagtctgttctctctcaatctctagaaaattag |
137 |
Q |
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| T |
2643329 |
ataacaaacactgagaatgaccatgctatcccaaactgtcatgggaaaactgaagttttcaagatatgagtctgttctctcttgatctctagataactag |
2643428 |
T |
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| Q |
138 |
ttgattttatatcgttcaaaaagaggaaagaa |
169 |
Q |
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| T |
2643429 |
ttgattttatattgttcaaaaagaggatagaa |
2643460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 2503542 - 2503403
Alignment:
| Q |
28 |
caactgagctgataacaaacactgagaatgaccatgctatcccaaactatcatgggaaagctgaagttt-caagaaatgagtctgttctctctcaatctc |
126 |
Q |
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| T |
2503542 |
caactaagctaataacaaacac-gagaatgatcatgatatcccaacctgtcattggaaaactgaagttttcaagttatgagtctgttctctctcaatctc |
2503444 |
T |
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| Q |
127 |
tagaaaattagttgattttatatcgttcaaaaagaggaaaga |
168 |
Q |
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| T |
2503443 |
tagataag-agttgattttaaatcgttcaaaaagaggaaaga |
2503403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 2494188 - 2494080
Alignment:
| Q |
69 |
ccaaactatcatgggaaagctgaagttt-caagaaatgagtctgttctctctcaatctctagaaaattagttgattttatatcgttcaaaaagaggaaag |
167 |
Q |
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|||||||||||||||||| ||||||||| ||||| |||| | | ||||||| ||||||||||| | || ||||||| | ||| |||||| ||||||||| |
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| T |
2494188 |
ccaaactatcatgggaaaactgaagttttcaagatatgactatattctctcccaatctctagatagctaattgatttaagatctttcaaacagaggaaag |
2494089 |
T |
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| Q |
168 |
aacggacct |
176 |
Q |
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| T |
2494088 |
aaaggacct |
2494080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 620 - 566
Alignment:
| Q |
112 |
ttctctctcaatctctagaaaattagttgattttatatcgttcaaaaagaggaaa |
166 |
Q |
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| T |
620 |
ttctctcacaatctctagataactaattgattttatatctttcaaaaagaggaaa |
566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 18756618 - 18756519
Alignment:
| Q |
66 |
atcccaaactatcatgggaaagctgaagtttcaagaaatgagtctgttctctctcaatctctagaaaattagttgattttatatcgttcaaaaagaggaa |
165 |
Q |
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| T |
18756618 |
atcccaaactgtcattggaaaactaaggtttcca-agatgattctattctctcacaatctctagataactaagtgattttatatctttcaaaaagaggaa |
18756520 |
T |
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