View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12846_low_1 (Length: 546)
Name: NF12846_low_1
Description: NF12846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12846_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 20 - 541
Target Start/End: Original strand, 18009801 - 18010321
Alignment:
| Q |
20 |
aaaatgtatagatttaattattggaaaaagtgaatgaaaaagtaaaacatattaaactaagattaagcatgtcttttatacacacacaaatatgcatgca |
119 |
Q |
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| T |
18009801 |
aaaatgtatagatttaattattggaaaaagtgaatgaaaaagtaaaacatattaaactaagattaagcatgtcttt-acacacacataaatatgcatgca |
18009899 |
T |
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| Q |
120 |
catagacaatgagtttggattatatatttagaatgagatattgtaatgttaaaatataaaaagaacaaagtatgcataccttccaataaatttaagtttt |
219 |
Q |
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| T |
18009900 |
cactgacaatgagttaggattatatgttcagaatgacatattgtaatgttaaaatataaaaagaacaaagtatacataccttccaatatatttaagtttt |
18009999 |
T |
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| Q |
220 |
ccaactcaaatgtaccatctaagaagctggtgtcagaagagaaagctgagcttgcttcaaccaacatagtacttgaatctattgcagatccaatctcatg |
319 |
Q |
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| T |
18010000 |
ccaactcaaatgtaccatctaagaagctggtgtcagaagagaaagctgagtttgcttcaaccaacatagtacttgaatctattgcagatccaatctcatg |
18010099 |
T |
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| Q |
320 |
gtcattgctagcagcacattcattgtctctcaagcctatactcttttctgactttatgtcatcattaacatctgatcctgattctgtttctgaaggactc |
419 |
Q |
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| T |
18010100 |
gtcattgctagcagcacattcattgtctctcaagcctatactcttttctgactttatgtcatcattaacatctgatcctgattctgtttcggaaggactc |
18010199 |
T |
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| Q |
420 |
ttaacaataacttgttttttatcatcattcaaaatgcattcttcatttgtatgatcagaaattgtaggtgacaaagtttgactatttgtgtagtcatcat |
519 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18010200 |
ttaacaataacttgttttttatcatcattcaaaatgttttcttcatttgtatgatcagaaattgtaggtgacaaagtttgactatttgtgtagtcatcat |
18010299 |
T |
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| Q |
520 |
ttgtacttgtgcctatgcttct |
541 |
Q |
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| T |
18010300 |
ttgcacttgtgcctatggttct |
18010321 |
T |
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