View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12846_low_10 (Length: 225)
Name: NF12846_low_10
Description: NF12846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12846_low_10 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 43616625 - 43616726
Alignment:
| Q |
18 |
agtttaataggtgcatatataaactcactcaaataccctcattttccattactcatctatcatcacattacctacactttcctcatcaatttttcatata |
117 |
Q |
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| T |
43616625 |
agtttaataggtgcatatataaactcactcaaataccctcattttccatcactcatctatcatcacattacctacactttcctcatcaatttttcatata |
43616724 |
T |
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| Q |
118 |
aa |
119 |
Q |
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|| |
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| T |
43616725 |
aa |
43616726 |
T |
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Target: scaffold0016 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 38238 - 38160
Alignment:
| Q |
36 |
ataaactcactcaaataccctcattttccattactcatctatcatcacattacctacactttcctcatcaatttttcat |
114 |
Q |
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|||||||| ||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38238 |
ataaactctctcaaataccctcatgtttcattactcatctatcatcacattacttacactttcctcatcaatttttcat |
38160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 16149 - 16204
Alignment:
| Q |
59 |
ttttccattactcatctatcatcacattacctacactttcctcatcaatttttcat |
114 |
Q |
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||||| || |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16149 |
ttttcaatcactcatctatcatcacattacctacacttttctcatcaatttttcat |
16204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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