View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12846_low_11 (Length: 203)
Name: NF12846_low_11
Description: NF12846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12846_low_11 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 7333059 - 7332857
Alignment:
| Q |
1 |
tcagttctcattagacctttgctgatgtaacaaatgctatgtgacgaggattatactttattgcacaatggaatttattcatgaacatgatctaattctt |
100 |
Q |
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| T |
7333059 |
tcagttctcattagacctttgctgatgtaacaaatgctatgtgacgaggattatactttattgcacaatggaatttattcatgaacatgatctaattctt |
7332960 |
T |
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| Q |
101 |
gcagtgcttctattttatgatgtatatggttacatttatcgaatgaggattctttaccaattagccttttcttttcttggttgtgaatggtgatgatcgt |
200 |
Q |
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| T |
7332959 |
gcagtgcttctattttatgatgtatatggttacatttatcgaatgaggattctttaccaattagccttttcttttcttggtggtaaatggtgatgatagt |
7332860 |
T |
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| Q |
201 |
tgt |
203 |
Q |
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||| |
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| T |
7332859 |
tgt |
7332857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 2643594 - 2643505
Alignment:
| Q |
95 |
attcttgcagtgcttctattttatgatgtatatggttacatttatcgaatgaggattctttaccaattagccttttcttttcttggttgtga |
186 |
Q |
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| T |
2643594 |
attctcgcagagcttctattttatgatgtat--ggttacatttatcaaatgaggattctttaccaattagcctattattttcttggtggtga |
2643505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 2503256 - 2503345
Alignment:
| Q |
85 |
acatgatctaattcttgcagtgcttctattttatgatgtatatggttacatttat-------cgaatgaggattctttaccaattagccttt |
169 |
Q |
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| T |
2503256 |
acatgatctaattcttgcagtgcttctatgttatgatg--tatggttacatttatcaaatgactaatgaggattctttaccaattagccttt |
2503345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 20303097 - 20303247
Alignment:
| Q |
12 |
tagacctttgctgatgtaacaaatgctatgtgacgaggattatactttattgcacaatggaatttattcatgaacatgatctaattcttgcagtgcttct |
111 |
Q |
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| T |
20303097 |
tagaccttggctaatgtaaaaaatgttacgtgacatggatgatatttttctgcacggtgcaagttattcatgaacaagatctaattcttgcaatattttt |
20303196 |
T |
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| Q |
112 |
attttatgatgtatatggttacatttatcgaatgaggattctttaccaatta |
163 |
Q |
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| T |
20303197 |
attttatgatgtat-cggttacaattatcaaacgaggcttctttaccaatta |
20303247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 20307573 - 20307660
Alignment:
| Q |
75 |
ttattcatgaacatgatctaattcttgcagtgcttctattttatgatgtatatggttacatttatcgaatgaggattctttaccaatta |
163 |
Q |
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| T |
20307573 |
ttattcatgaacaagatctaattcttgcaatatttttattttatgatgtat-cggttacaattatcaaacgaggcttctttaccaatta |
20307660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 20298044 - 20298194
Alignment:
| Q |
12 |
tagacctttgctgatgtaacaaatgctatgtgacgaggattatactttattgcacaatggaatttattcatgaacatgatctaattcttgcagtgcttct |
111 |
Q |
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||||||| ||| |||||| ||||| || ||||| |||||||| ||| ||||| || || ||||||||||||| ||||||||||||||| | ||| |
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| T |
20298044 |
tagacctcggctaatgtaaaaaatgttacgtgacatggattatatttttctgcacggtgcaagttattcatgaacaagatctaattcttgcaatatttca |
20298143 |
T |
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| Q |
112 |
attttatgatgtatatggttacatttatcgaatgaggattctttaccaatta |
163 |
Q |
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| T |
20298144 |
attttatgatgt-ttcggttacagttatcaaacgaggcttctttaccaatta |
20298194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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