View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12846_low_4 (Length: 341)
Name: NF12846_low_4
Description: NF12846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12846_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 42801959 - 42802142
Alignment:
| Q |
1 |
atttataactcagatttcttctcaattctacgcttatcctcttcattnnnnnnnntctaaatataagctaaaaattccttttatgctagtatttcacaaa |
100 |
Q |
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| T |
42801959 |
atttataactcagatttcttctcaattctacgcttatcctcttcattaaaaaaaatctaaatataagctaaaaattccttttatgctagtatttcacaaa |
42802058 |
T |
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| Q |
101 |
cattcatcatgtaatttaacaattaaatttaccatacattaaaaattcaactaaccaattctacagctatcaactcatatgtac |
184 |
Q |
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| T |
42802059 |
cattcatcatgtaatttaacaattaaatttaccatacattaaaaattcaactaaccaattctacagctatcaactcatatgtac |
42802142 |
T |
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Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 42802207 - 42802295
Alignment:
| Q |
249 |
tatttgagtatagtttgcgccactcaacgcaaacaaatgtcgtcttattcttcttcatcttttaaatgaagacacacttcatctcactc |
337 |
Q |
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| T |
42802207 |
tatttgagtatagtttgcgccactcaacgcaaacaaatgtcgtcttattcttcttcatcttttaaatgaagacacacttcatttcactc |
42802295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 47683 - 47740
Alignment:
| Q |
252 |
ttgagtatagtttgcgccactcaacgcaaacaaatgtcgtcttattcttcttcatctt |
309 |
Q |
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| T |
47683 |
ttgagtatagtttacgccactcaactcaaacaaatgtcgtcttattcttattcttctt |
47740 |
T |
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