View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12846_low_5 (Length: 323)
Name: NF12846_low_5
Description: NF12846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12846_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 43678015 - 43678306
Alignment:
| Q |
17 |
aggcatatccatatttgtatttgcataattgttgccttccatactattaatccagcaaagctccactttctttccatgtttaccagccatctttataatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43678015 |
aggcatatccatatttgtatttgcataattgttgccttccatactattaatccagcaaagctccactttctttccatgtttaccagccatctttataatt |
43678114 |
T |
|
| Q |
117 |
ttctttgaatccaccttgcctgaaatatatatcattccttcctttgtatcgaagttgtagcttaaacctattatcaacataaaacatatatttcaatatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43678115 |
ttctttgaatccaccttgcctgaaatatatatcattccttcctttgtatcgaagttgtagcttaaacctattatcaacataaaacatatatttcaatatt |
43678214 |
T |
|
| Q |
217 |
ttattgnnnnnnnnnnngaatagttgattaaatatataaaatgatcaaatacatttttcatctnnnnnnnnggttttaaaagtgacatgttt |
308 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
43678215 |
ttattgaaaaaaaaaaacaatagttgattaaatatataaaaggatcaaatacatttttcatctaaaaaaaaggttttaaaagtaacatgttt |
43678306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 38 - 187
Target Start/End: Complemental strand, 43579873 - 43579724
Alignment:
| Q |
38 |
tgcataattgttgccttccatactattaatccagcaaagctccactttctttccatgtttaccagccatctttataattttctttgaatccaccttgcct |
137 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| | |||| | |||||||| || ||||| ||||||||| |
|
|
| T |
43579873 |
tgcataactgttgccttccttactattaatccagcaaagcttcactttctttccatgtttggatgtcatcctcataattttattcgaatctaccttgcct |
43579774 |
T |
|
| Q |
138 |
gaaatatatatcattccttcctttgtatcgaagttgtagcttaaacctat |
187 |
Q |
| |
|
|| |||||||| || |||||||||||||| |||||||||||||||||||| |
|
|
| T |
43579773 |
gagatatatattatcccttcctttgtatcaaagttgtagcttaaacctat |
43579724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University